| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 341,363 | T→C | 5.5% | intergenic (‑257/‑121) | PP_5438 ← / → gabP‑I | hypothetical protein/gamma‑aminobutyrate permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 341,363 | 0 | T | C | 5.5% | 269.5 / 3.3 | 90 | intergenic (‑257/‑121) | PP_5438/gabP‑I | hypothetical protein/gamma‑aminobutyrate permease |
| Reads supporting (aligned to +/- strand): ref base T (38/47); new base C (3/2); total (41/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01 | |||||||||||
CACAGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGAC > NC_002947/341217‑341507 | cacaGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTc < 6:263166/149‑1 (MQ=255)cacaGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAATGCACTc > 2:111427/1‑149 (MQ=255) caGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCg > 5:377520/1‑148 (MQ=255) aGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTc < 7:67744/149‑1 (MQ=255) aGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTc < 6:167189/149‑1 (MQ=255) gtTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCatat > 3:181816/1‑149 (MQ=255) ttACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATg < 5:42101/149‑1 (MQ=255) aCCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAATGCACTCGTCagaaaa < 1:111427/148‑6 (MQ=255) ccGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAATGCACTCGTCagaaaatt < 7:256167/149‑8 (MQ=255) cGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGgcgc > 8:198987/1‑149 (MQ=255) ggagCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCt < 3:116415/149‑1 (MQ=255) gagCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCt > 4:263038/1‑148 (MQ=255) cACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTAtt > 3:38256/1‑149 (MQ=255) ccTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGc > 6:243035/1‑149 (MQ=255) ccTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGc < 3:60439/149‑1 (MQ=255) cTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGc > 1:179074/1‑148 (MQ=255) cTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCT‑AAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCa > 6:201157/1‑149 (MQ=255) tttGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCa > 7:176544/1‑149 (MQ=255) tGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAg < 4:38256/148‑1 (MQ=255) gTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGtt < 3:219089/148‑1 (MQ=255) gTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTg > 3:236440/1‑149 (MQ=255) tGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTg < 8:176544/148‑1 (MQ=255) gCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTgg > 8:239131/1‑148 (MQ=255) aGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGa < 6:134388/149‑1 (MQ=255) aGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCAGAAAGC‑ACTACAGGCCGCATCATAAAAGGCCTTCAGAATTTTCTGACGAGTGCATTCGTCATATGGAGCGCTTATTGCCATTTGGAAACCGCCGa > 5:164979/1‑149 (MQ=255) gggTATTTCATTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGAtt < 7:142383/148‑1 (MQ=255) ggTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTAtt < 6:267146/126‑1 (MQ=255) ggTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTAtt > 5:267146/1‑126 (MQ=255) tATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAg < 7:198987/149‑1 (MQ=255) aGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACg < 3:263038/148‑1 (MQ=255) aGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGc > 1:96748/1‑149 (MQ=255) aTCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCT‑AAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAgg < 5:201157/149‑1 (MQ=255) gCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTAt < 6:207690/109‑1 (MQ=255) gCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCa > 7:13541/1‑149 (MQ=255) aTTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATccc < 6:25330/149‑1 (MQ=255) aTTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATccc > 8:136932/1‑149 (MQ=255) tttGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATcccc < 4:236440/149‑1 (MQ=255) tGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTAtt > 2:178651/1‑103 (MQ=255) gAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTg < 8:42352/148‑1 (MQ=255) gAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTg < 2:179074/148‑1 (MQ=255) gAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTg < 7:136932/148‑1 (MQ=255) gAGGTACTTTCTTTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTATAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGTAAACCGCCGATTGCAGCTACGCCTAGGTCATCCCCTg < 6:164979/148‑1 (MQ=255) aGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGgc > 7:100771/1‑149 (MQ=255) gTCCTTTCGGTCATTCAATGGCCGAAAGCTCCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGgcg > 1:28896/1‑149 (MQ=255) ttCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGctct > 1:181549/1‑149 (MQ=255) tCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGctct < 4:181816/148‑1 (MQ=255) tCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGctc < 7:239131/147‑1 (MQ=255) tGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCg > 1:349310/1‑148 (MQ=255) gCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCg > 5:174053/1‑147 (MQ=255) aaTGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGt > 3:307249/1‑149 (MQ=255) aaTGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGt > 3:361719/1‑149 (MQ=255) cGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTTGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGt < 7:322129/149‑1 (MQ=255) cGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGt < 5:243035/149‑1 (MQ=255) gAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATTGCGCTCTTATTGCCAGTTTGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTg < 8:256811/149‑1 (MQ=255) aaaGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTgg > 5:107985/1‑149 (MQ=255) gC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTa > 8:233067/1‑130 (MQ=255) gC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTa < 7:233067/130‑1 (MQ=255) c‑ccTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCa > 4:146428/1‑149 (MQ=255) cTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACt > 5:22392/1‑149 (MQ=255) cTCCAGGCCGCATCCT‑AAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTc > 3:257094/1‑149 (MQ=255) ccAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAAccgcc > 4:356462/1‑84 (MQ=255) ccAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAAccgcc < 3:356462/84‑1 (MQ=255) ccAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTcc > 8:94484/1‑149 (MQ=255) cAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCt > 2:242576/1‑149 (MQ=255) aGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTc < 4:282126/141‑1 (MQ=255) aGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTc > 3:282126/1‑141 (MQ=255) aGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCtt < 2:28896/149‑1 (MQ=255) aGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCtt < 6:174053/149‑1 (MQ=255) cGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACaa < 8:13541/149‑1 (MQ=255) cTAAAAGGCCTGCAGTATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGTAAACCGCCGATTGCAGCGACGCCTAGGTCATCGCGTGGCGCTCTCTGTACACGCAGTCGGCGTGGTCCACTCCTTACAAAGGTa < 8:119789/148‑1 (MQ=255) tAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGt > 7:95919/1‑149 (MQ=255) aaaGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGttt > 7:269191/1‑149 (MQ=255) ggCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACGGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCaa < 6:377520/149‑1 (MQ=255) ggCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCaa < 7:94484/149‑1 (MQ=255) ggCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCaa < 8:95919/149‑1 (MQ=255) cTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGa < 3:146428/149‑1 (MQ=255) cTGCAGAATTTTCTGACGAGTGCACTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAAt > 4:258524/1‑147 (MQ=255) tGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTc > 4:227958/1‑126 (MQ=255) tGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTc < 3:227958/126‑1 (MQ=255) cAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAg < 2:181549/147‑1 (MQ=255) cAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAg < 7:303670/147‑1 (MQ=255) aGAATTTTCTGACGAGGGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCg < 6:107985/148‑1 (MQ=255) catatGACGAATGCACTCGTCATATGGCGCGGTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAAc > 5:242773/5‑148 (MQ=255) gACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCAT‑CCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTc > 7:282426/1‑147 (MQ=255) gACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCAT‑CCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTc < 8:282426/147‑1 (MQ=255) aCGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTc < 4:361719/147‑1 (MQ=255) aCGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTc < 8:269191/147‑1 (MQ=255) gAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAAt < 4:257094/149‑1 (MQ=255) gTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGa > 4:75805/1‑149 (MQ=255) tGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGAc < 8:100771/149‑1 (MQ=255) | CACAGGTGTTACCGAGGAGCACCTTTGGTGCATTTGTAAGTGGGTATTTCAGTAATCCGCTGATTTGAGGTCCTTTCGGTCATGCAATGGCCGAAAGC‑CCTCCAGGCCGCATCCTAAAAGGCCTGCAGAATTTTCTGACGAGTGCATTCGTCATATGGCGCGCTTATTGCCAGTTGGAAACCGCCGATTGCAGCGACGCCTAGGTCATCCCCTGGCGCGCTCTGTACCCGCAGTCGGCGTGGTCCACTCCTTACAAAGGTAGTTTCAATGAGCGGTAACAATTCCAATGAC > NC_002947/341217‑341507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |