| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,914,865 | G→C | 8.2% | intergenic (‑79/‑167) | PP_3454 ← / → PP_3455 | transcriptional regulator/multidrug RND transporter membrane fusion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,914,865 | 0 | G | C | 8.2% | 218.6 / 7.1 | 70 | intergenic (‑79/‑167) | PP_3454/PP_3455 | transcriptional regulator/multidrug RND transporter membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base G (30/34); new base C (3/3); total (33/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.94e-01 | |||||||||||
CGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGT > NC_002947/3914719‑3915013 | cgttgcAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAg < 2:43611/149‑1 (MQ=255) gttgcAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc > 3:247670/1‑149 (MQ=255) gttgcAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc < 7:181031/149‑1 (MQ=255) ttgcAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCg > 3:170273/1‑149 (MQ=255) cAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCggg < 7:309845/148‑1 (MQ=255) aGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGtt > 6:34776/1‑149 (MQ=255) gTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCa > 6:299337/1‑149 (MQ=255) aGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCAcc > 6:327624/1‑149 (MQ=255) cTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCcg < 5:3258/149‑1 (MQ=25) tGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCcgc > 8:329547/1‑149 (MQ=255) tGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCcgc > 1:378441/1‑149 (MQ=255) tGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCcgc > 5:120691/1‑149 (MQ=255) nggCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCACCGTAGGAGCGGGTTCACCcgc > 2:109996/2‑149 (MQ=255) gCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGGTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTGAACCcgctc < 3:295854/149‑3 (MQ=255) gATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc < 6:1780/133‑1 (MQ=255) gATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc > 5:1780/1‑133 (MQ=255) aTCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAaga < 6:54412/149‑1 (MQ=255) tCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAagag < 3:71068/149‑1 (MQ=255) tCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAg > 8:4/1‑149 (MQ=255) cAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAg < 5:299337/149‑1 (MQ=255) gggCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGc < 5:327624/149‑1 (MQ=255) tGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGGTCACCCGCGAAGCGGCCAGCACAGGCCCAGGc > 4:322143/1‑149 (MQ=255) gtcTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGaa > 4:351573/1‑149 (MQ=255) gtcTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGa < 6:92653/148‑1 (MQ=255) tcTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCGGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAat < 1:109996/149‑1 (MQ=255) ttCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCgg > 3:237545/1‑108 (MQ=255) ttCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCgg < 4:237545/108‑1 (MQ=255) aCCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGaa < 6:120691/149‑1 (MQ=255) cAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAAcc < 8:158411/149‑1 (MQ=255) aGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGc > 6:139837/1‑119 (MQ=255) gAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCaa > 3:14085/1‑149 (MQ=255) gAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCaa > 6:279372/1‑149 (MQ=255) aaaaTGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAAc < 7:257642/149‑1 (MQ=255) tGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACt < 7:329547/149‑1 (MQ=255) gTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCAt > 4:82415/1‑149 (MQ=255) tGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc < 7:28520/79‑1 (MQ=255) tGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGc > 8:28520/1‑79 (MQ=255) ttGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCAttctt < 5:34776/149‑1 (MQ=255) gggCGTCTGGGTTTAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCAttctt < 7:165714/147‑1 (MQ=255) ggTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACttttt > 6:38989/1‑148 (MQ=255) ggTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACttttt < 7:246178/148‑1 (MQ=255) gTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTca > 2:174805/1‑149 (MQ=255) gTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCACCCACTCGACAGGATCATTCTTCACACTTTTTCACACTCg > 1:57757/1‑149 (MQ=255) tAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGc > 2:296188/1‑149 (MQ=255) cTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGTAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAAGCACTCGCCAGGATCATTGTTCACACTTTTTCACACTCTCCGTa > 5:186927/1‑148 (MQ=38) cTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTAc < 4:247670/149‑1 (MQ=255) cGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCCCACTTTTTCACACTCGCCCTACAGGTAt < 1:214481/149‑1 (MQ=255) gAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTAtt < 6:25602/149‑1 (MQ=255) gcgcTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTaa < 2:201104/149‑1 (MQ=255) cTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGCAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACCCTTTTTCACACTCGCCCTACAGGTATTAACAg > 3:2950/1‑149 (MQ=255) cgcgGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAgc < 5:38989/147‑1 (MQ=255) gggTAAACCCGTTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATACAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAg < 3:105468/133‑1 (MQ=255) ggTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTAtt > 3:226516/1‑137 (MQ=25) ggTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTAtt < 4:226516/137‑1 (MQ=25) ggTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACa < 5:221871/141‑1 (MQ=18) ggTGAACCCGCTCCTACGGGGACCTGCAGCAGCGGGTTTACCCGCGAAGCGCTCGCCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACa > 6:221871/1‑141 (MQ=18) tAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATACTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAgg > 2:77688/1‑149 (MQ=255) aCCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACCCTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAg > 5:151266/1‑149 (MQ=255) cccGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGc < 3:351573/149‑1 (MQ=255) gctgctGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTc < 1:296188/149‑1 (MQ=255) ctgctgCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCt < 2:378441/149‑1 (MQ=255) gctgcAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGcc < 6:42516/114‑1 (MQ=255) gctgcAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGcc > 5:42516/1‑114 (MQ=255) gcAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCt > 6:136237/1‑148 (MQ=255) gTCCCCGTAGCAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATATAACACAACCACTCGACAGCATCATTCTTCACACTTTTTAACACACGCCCTACAGGTATTAACAGCCGCCAAGGCAGCGTCTGCCATAGCa > 4:311111/1‑149 (MQ=38) ccccGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCata < 4:170273/149‑1 (MQ=255) ccGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCGCTACAGGTATTAACAGCCGCCCAGGCAGCGTc < 5:110390/135‑1 (MQ=255) ccGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTc > 6:110390/1‑135 (MQ=255) cGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATac < 7:293828/149‑1 (MQ=255) tAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCACCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATacac < 3:82415/149‑1 (MQ=255) ggAGCGGTTTCACGCGCGAAGAGGCCTGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACTCTTTTTCACACTCGACCTACAGGTTTTAACATCCGCCCAGGCAGCGTCTGCGTTAGCATATACACgg < 3:311111/149‑1 (MQ=255) ggAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACg < 1:174805/148‑1 (MQ=255) gAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGt > 1:289241/1‑149 (MQ=255) | CGTTGCAGGTAGCTGGCGATCAGCTCGGACAGGGCGCTGTCGTCTTCGACCAGGAAAATGTTCGGCATAGGTGCTTGGGCGTCTGGGTTGAAGTAAGCCTGTGGCGAGCGCTTCGCGGGTAAACCCGCTGCTGCAGGTCCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCCCATGCAGAATATAGAACCCAACCACTCGACAGGATCATTCTTCACACTTTTTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGT > NC_002947/3914719‑3915013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |