New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5045678 =	0 (0.000)	31 (0.920)	28/284	0.3	100%	intergenic (‑45/+48)	PP_4449/PP_5682	hypothetical protein/hypothetical protein
	?	NC_002947	= 5545666	NA (NA)					intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

TTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045826‑5045678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTG  <  NC_002947/5545666‑5545536                                                                                                                                                                                                                                                                                          TTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGA                                                                                                                                      <  5:177234/148‑1      CTTGAGCGATTGGGGCTGATGGCTGAGCACCGGTTCCAAGCAGTTACTGATTACCAGCGTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCGAGAGAGTGGCTATGCACGTTTTCAGCTTCATTAGAGATaa                                                                                                                                 >  1:187440/1‑146       TTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCAC                                                                                                                                >  2:140051/1‑148           GCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAG                                                                                                                            >  8:25584/1‑148              ATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTAAGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCC                                                                                                                         >  8:49485/1‑148                       GATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCT                                                                                                                >  7:137862/1‑148                             TGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTG                                                                                                          >  5:47040/1‑148                                ggACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTC                                                                                                        <  8:51035/145‑1                                       TTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGC                                                                                                 >  8:129935/1‑147                                            AGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAG                                                                                           <  2:193588/148‑1                                             GCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTAAGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGG                                                                                          <  7:49485/148‑1                                                     TGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGATATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCATCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCA                                                                                   >  2:96075/1‑147                                                       ATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGA                                                                                >  2:191989/1‑148                                                       ATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGA                                                                                >  5:55228/1‑148                                                            CAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACG                                                                              >  3:163732/1‑145                                                                TTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGA                                                                                                                                      >  1:193210/1‑85                                                                 TAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAG                                                                                                                                     <  2:193210/85‑1                                                                   GGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCT                                                                      <  8:7461/146‑1                                                                         TGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGcc                                                              >  2:42851/1‑146                                                                            GCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATC                                                           <  4:163732/148‑1                                                                            GCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATC                                                           <  3:170606/148‑1                                                                                CCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTGAGCTTCATGAGAGATCACCCAGCCCTTCCGTGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGA                                                       <  7:61030/148‑1                                                                                 CCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGAT                                                      >  8:32363/1‑148                                                                                         GGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                              >  6:9156/1‑148                                                                                         GGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                              <  7:129935/148‑1                                                                                         GGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                              <  1:154201/148‑1                                                                                               TCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTC                                        >  6:107205/1‑148                                                                                                CATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCG                                       >  8:60861/1‑148                                                                                                 ATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGC                                      >  2:107028/1‑148                                                                                                  TTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGC                                      >  1:50409/1‑147                                                                                                      CATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAC                                  <  6:55228/147‑1                                                                                                          TGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATC                             >  1:119842/1‑148                                                                                                                              TGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGA          >  6:126962/1‑147                                                                                                                                     TTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTG  <  5:32396/148‑1                                                                                                                                                                                                                                                                                          TTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045826‑5045678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTG  <  NC_002947/5545666‑5545536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.