| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3366553 = | 32 (0.930) | 34 (1.010) | 29/286 | 0.3 | 67.6% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947 | 4950854 = | 1 (0.030) | intergenic (‑4/+153) | fliL/fliK | flagellar protein FliL/flagellar hook‑length control protein FliK | |||||
GAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAAC > NC_002947/4950709‑4951001 | gAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCaa > 1:32516/1‑147 (MQ=255) atcccccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccaata < 8:68553‑M2/4‑1 (MQ=255) atcccccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccaata > 5:177053‑M2/145‑148 (MQ=255) ccccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccaataa > 8:175803‑M2/142‑146 (MQ=255) ccccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATc > 6:110136‑M2/142‑148 (MQ=255) ccccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATc > 3:139443‑M2/142‑148 (MQ=255) cccaagcgaggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATc < 2:127731‑M2/7‑1 (MQ=255) tcgctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtc < 2:5511‑M2/148‑7 (MQ=255) gtgCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgc < 3:97423‑M2/144‑11 (MQ=255) aagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCgggg < 3:178615‑M2/22‑1 (MQ=255) atgatgAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataa < 4:93007‑M2/148‑19 (MQ=255) atgatgAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataa < 4:90066‑M2/148‑19 (MQ=255) atgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCGTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataagg < 4:59510‑M2/147‑21 (MQ=255) cAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaat > 8:20767‑M2/1‑121 (MQ=255) atagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCaaa > 4:13992‑M2/117‑145 (MQ=255) tagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTAAAAGga > 5:76024‑M2/116‑147 (MQ=255) gTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattag > 2:32516‑M2/1‑118 (MQ=255) gcCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacat < 2:177327‑M2/148‑36 (MQ=255) ccACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattc < 8:175893‑M2/148‑38 (MQ=255) cACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGCCTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcg < 5:60768‑M2/148‑39 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttggc < 6:54069‑M2/44‑1 (MQ=255) tggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCaa > 4:154709‑M2/97‑148 (MQ=255) gCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 8:151391‑M2/1‑101 (MQ=255) gATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagcta > 4:93401‑M2/1‑98 (MQ=255) tCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt > 5:44734‑M2/1‑96 (MQ=255) ccAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgta < 2:18805‑M2/148‑56 (MQ=255) cAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtat > 7:175893‑M2/1‑92 (MQ=255) agcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATg > 1:133896‑M2/88‑147 (MQ=255) caagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCa < 6:154999‑M2/63‑1 (MQ=255) aCAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaa < 7:108720‑M2/148‑62 (MQ=255) ggctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCa < 8:117964‑M2/72‑1 (MQ=255) gcctctcgaataaccttttaaatcataaatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCa > 6:153558‑M2/77‑148 (MQ=255) tctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCa > 4:32744‑M2/74‑124 (MQ=255) tctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAgg > 6:37950‑M2/74‑147 (MQ=255) cgacAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 4:97423‑M2/1‑78 (MQ=255) acAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagatta > 2:42126‑M2/1‑76 (MQ=255) aataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGggat < 4:173968‑M2/78‑1 (MQ=255) agcagGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagca < 1:4538‑M2/148‑79 (MQ=255) accttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc > 4:1704‑M2/65‑148 (MQ=255) ccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc < 1:133602‑M2/84‑1 (MQ=255) cttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCca < 4:180420‑M2/86‑1 (MQ=255) atcatatatttacagaacgaatgtcctaatttttgccttatctcggcataacccaAATAATCCGTCGTCAATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCAAGATTTTGCAGGGGATGGATTCCAGCAGGtt > 7:171746‑M2/56‑148 (MQ=255) tcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGttt > 1:144050‑M2/55‑148 (MQ=255) tatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGc < 8:172429‑M2/97‑1 (MQ=255) tatatctacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTg < 8:120062‑M2/96‑1 (MQ=255) gTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagac > 2:4538‑M2/1‑54 (MQ=255) ttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTg > 6:45084‑M2/47‑142 (MQ=255) tacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGc < 5:45084‑M2/97‑1 (MQ=255) acagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCt < 1:87115‑M2/103‑1 (MQ=255) tttAGTGGCGGGGTCTTTGACTGCCTCGCTCTTCGCCATGCCAATAAggggtcaagccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgc < 7:128999‑M2/148‑102 (MQ=255) tGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccca < 1:25511‑M2/148‑107 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGcttctt > 1:137656‑M2/38‑148 (MQ=255) cctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCgg < 4:139443‑M2/116‑1 (MQ=255) gTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgctt > 1:18805‑M2/1‑35 (MQ=255) ttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCGAGCCCGCgaag < 3:1704‑M2/130‑1 (MQ=255) ttCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccat < 6:79174‑M2/147‑125 (MQ=255) ttCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccat < 5:121723‑M2/147‑125 (MQ=255) ttCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccat < 7:180065‑M2/147‑125 (MQ=255) tctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCgaagaa < 1:29679‑M2/132‑1 (MQ=255) gCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattga < 4:69934‑M2/147‑128 (MQ=255) tcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTTCGGTGCTGGATTGTTCGCGGGAGagcccgcgactccgcc > 8:67958‑M2/14‑141 (MQ=255) tcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAAGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGAGGTGCTGGCTTCTTCGCGGGCTCGCCAGCGaagaag > 3:70929‑M2/14‑146 (MQ=255) ttCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaag < 4:177323‑M2/148‑133 (MQ=255) gCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaag > 2:190081‑M2/1‑13 (MQ=255) cAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagaagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggtttgatcta > 3:71638‑M2/1‑6 (MQ=255) aataatCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCa > 7:156819/1‑146 (MQ=255) aaTAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggtttgatctat < 2:158226‑M2/148‑144 (MQ=255) | GAGCCGGCTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAAC > NC_002947/4950709‑4951001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |