| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 97.8% | 146.8 / ‑3.2 | 45 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (20/24); total (21/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-01 | |||||||||||
GGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAA‑CCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGG > NC_002947/1126502‑1126778 | ggggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAA‑cccgc < 5:40779/149‑4 (MQ=255) ccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTa‑ca > 6:255780/1‑146 (MQ=255) cgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAATGCGGAGGTATAGCCACCATAGCCATAGCCGG‑TAAACCCGCTCCAA‑caca > 6:96408/1‑147 (MQ=255) gAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGcc < 7:63049/145‑1 (MQ=255) ggcGAAGACGCGCAGTGAAATGTGGACCTCGTGCCTGGTTGTGGGGGTGACTTTGAGCCCTGTCGGCGCGGGTTTACGCGCGAATGCGGAGTTATAGCCACAATCGAATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCaa < 6:28882/147‑1 (MQ=25) tCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGAATGCGGAGGTATAGCCCCCATCGCCTTAGCGGG‑GAAACCCGCGCCGA‑CCCAGCGCCCGCCCCCCCAg > 6:253892/1‑149 (MQ=255) gAAGACGCTCATGGACATGTGGACCTCCTGCCAGGTTGTGGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGcc < 8:41483/149‑1 (MQ=38) aaGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCGCGAATGGGGAGGTATTGCCACCATCGCATTAGCGGGTTAAC‑CCGCTCCTA‑AACAGAGCCCCCCCCCCAAGc > 5:146526/1‑147 (MQ=255) tGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGa < 5:255780/149‑1 (MQ=255) tGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGa < 3:89347/149‑1 (MQ=255) aCCTCCTGCCAGGTTGTTGGGGGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAg < 3:273983/149‑1 (MQ=255) ctcctGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGc > 5:238985/1‑149 (MQ=255) ccAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTcc < 2:83047/147‑1 (MQ=255) aGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGATTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCt < 1:26428/94‑1 (MQ=255) gttgtgGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGACGTATAGCCACCATCCCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAg < 1:283828/149‑1 (MQ=38) ttgGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGctct > 1:57275/1‑149 (MQ=255) aCATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 5:253892/149‑1 (MQ=255) aCATTGAGCCCTGTAGGCGCGGGTTAACCCGCGAATGCGCAGGAAAAGCCACCATCGCATGCGCGGG‑AAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 5:204046/149‑1 (MQ=255) gcgCCCTGTCGGGGCGGGTTTACCCGCGAATGCGGCGGTATAGCCACCATCCCATTCGCTGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGc < 4:228900/146‑1 (MQ=37) cTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGgcgc < 6:238985/149‑1 (MQ=255) cgcgGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACCGGCAGGCGCACACCAg > 4:40096/1‑149 (MQ=255) ttaaCCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg < 5:174000/146‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc < 3:40096/149‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc < 5:96408/149‑1 (MQ=255) cgcgAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTATCACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 1:245340/1‑149 (MQ=255) cgcgAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTATCACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 1:249519/1‑149 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCg < 2:57275/149‑1 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGAATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGcc > 5:79684/1‑148 (MQ=255) gAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGaa > 3:227951/1‑149 (MQ=255) gAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACACAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGaa > 8:253121/1‑149 (MQ=255) ggTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTc < 6:146526/149‑1 (MQ=255) gTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCg < 4:192432/137‑1 (MQ=255) gTATAGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCg > 3:192432/1‑137 (MQ=255) taGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 4:3960/1‑132 (MQ=255) taGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc < 3:3960/132‑1 (MQ=255) taGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAcc > 7:189442/1‑149 (MQ=255) taGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAcc > 7:194275/1‑149 (MQ=255) taGCCACCATCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAcc > 1:197504/1‑149 (MQ=255) ccaccaTCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCgg > 8:66279/1‑149 (MQ=255) caTCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGa > 3:306298/1‑149 (MQ=255) aTCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTc < 6:281246/137‑1 (MQ=255) aTCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTc > 5:281246/1‑137 (MQ=255) tCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGa > 6:50899/1‑138 (MQ=255) tCGCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGa < 5:50899/138‑1 (MQ=255) gCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcgg < 8:189442/149‑1 (MQ=255) gCATTCGCGGG‑TAAACCCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcgg < 8:194275/149‑1 (MQ=255) | GGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑TAAA‑CCGCTCCTA‑CACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGG > NC_002947/1126502‑1126778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |