New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5549325 =	51 (1.090)	4 (0.130) +AAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTCACACAGT	4/184	4.2	12.3%	intergenic (‑272/‑1)	rnr/PP_t46	exoribonuclease R/tRNA‑Leu
	?	NC_002947	5549423 =	36 (0.770)					intergenic (+11/‑78)	PP_t46/PP_t47	tRNA‑Leu/tRNA‑Leu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGAACTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5549394‑5549325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAACAGATGACCAAGGATCTGTTACTACTGTGT  >  NC_002947/5549423‑5549457                                                                       |||||||||||||||||||||||||||||||||||||||||||||||||                                    TCGAACTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTC                                            >  5:125359/1‑112 TCGAACTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTC                                            <  6:125359/112‑1   GAACTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTCACACAGTAGTAACAGATGACCAAGGATCTGTTACTACTG     <  1:286753/149‑1      CTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTCACACAGTAGTAACAGATGACCAAGGATCTGTTACTACTGTGT  <  8:79542/149‑1                                 CTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTCACACAGTAGTAACAGATGACCAAGGATCTGTTACTA        <  3:17473/116‑1                                 CTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCAAAGCTTTACATCATCTGCAGAAGGCGACTATCGTTCGCTTTCACACAGTAGTAACAGATGACCAAGGATCTGTTACTA        >  4:17473/1‑116                                                                       |||||||||||||||||||||||||||||||||||||||||||||||||                                    TCGAACTTCCACGACCTTGCGGTCACTGATACCTGAAACCAGCGCGTCTACCAATTCCGCCACCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5549394‑5549325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAACAGATGACCAAGGATCTGTTACTACTGTGT  >  NC_002947/5549423‑5549457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.