| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.040) | 36 (0.790) +GCC |
30/276 | 0.7 | 94.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.040) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5555465‑5555608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCA > NC_002947/5555609‑5555747 |||| GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑C < 4:113645/146‑1GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑C > 3:113645/1‑146 ACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGG < 1:94756/148‑1 AGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTTTCGC‑CCAAAGGCCCCCTAGCGGCCCCCGGAAATTTC > 6:9472/1‑149 AGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCC > 8:194911/1‑149 GAAATTCTGGTCGGCCTGGGCAGCGATTTGTCGTGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGC < 6:183375/149‑1 GAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGC > 5:309519/1‑149 AATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGT < 6:309519/149‑1 TCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAA > 4:165209/1‑149 GCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATATCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCTCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGG < 4:229841/149‑1 ATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTG > 6:305799/1‑148 ATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTG < 5:305799/148‑1 TTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCT < 7:194911/149‑1 GTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAT < 3:165209/148‑1 TCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATG > 1:46220/1‑148 ACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCGCAGGTGTGGTAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGCCCcag < 3:166963/149‑4 TGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTAT > 2:290524/1‑114 TCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTACGCGTGTATGCAACAAACCAGGGGCTGCTATGCAGCCCTTTAGCG‑ACACAAGGCCCCCAAAGGACCG > 6:170848/1‑149 GCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGC < 2:46220/149‑1 CAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCC < 5:9472/149‑1 AACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGG > 6:23826/1‑89 AACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGG < 5:23826/89‑1 ACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTGCGCGTGGATGGAACAAACCTGGGGGTGCTATGCAGCCCGTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTGAGGGCCGG > 1:221950/1‑148 TCAGGTGTGGGAGCGGCCTTGTGTCGCAGAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGGCCGCGCAGGCTTCAGGCCCGGAACTG > 1:15092/1‑149 GGAGCGGCCTTGTGTCGC‑GAAATGGCCTCATAGCGG‑CCCAGGCAATTTCCGCGTTTATGCAACAAACCTGTGGCTGCTATGCTGCCATTTCGCT‑ACACAAGGCCAACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTG < 6:164450/149‑1 GTGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCT > 6:190037/1‑148 TGTCGC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGCCCACAAGGCCCACAACGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTG < 1:97775/149‑1 GC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCG > 1:60999/1‑149 GC‑GAAAGGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCG > 6:231882/1‑149 cgGGGCCGCTATGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGC > 3:248855/3‑146 GGGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGGCTCAGCTGCG‑CGCCAGcc < 2:221950/149‑3 GGCCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGAT > 2:326581/1‑148 CCGCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCAT > 3:5996/1‑149 GCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCC < 5:190037/149‑1 GCATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCC < 7:189255/149‑1 CATAGCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGGCCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCA < 2:15092/149‑1 GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATC < 6:219077/143‑1 GCGG‑CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATC > 5:219077/1‑143 CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAG < 3:292856/133‑1 CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAG > 4:292856/1‑133 |||| GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGC‑GAAAGGGCCGCATAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5555465‑5555608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG‑ACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGC‑GCGCAGCTGAGCCGCCAGATCATCCA > NC_002947/5555609‑5555747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |