New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	1 (0.020)	21 (0.600)	19/212	1.1	63.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	23 (0.660)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAA  >  NC_002947/4808032‑4808320                                                                                                                                               |                                                                                                                                                    gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                                <  8:114892‑M1/6‑1 (MQ=255) gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                                <  6:324061‑M1/6‑1 (MQ=255)         gggCGGAATTCGCGCGTTGGCGGGTAGGGGTGTGGCGGGAGGTGCGCAGCGCCGGGGAGGTGTTCGCCGGGCGCTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttc                                                                                                                                       <  7:106929/149‑4 (MQ=25)           ggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtataaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgc                                                                                                                                     <  2:134693‑M1/17‑1 (MQ=255)                gttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggatgggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                                >  1:271792‑M1/128‑149 (MQ=255)                   attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcgg                                                                                                                               >  3:143375‑M1/125‑147 (MQ=255)                   attcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcgg                                                                                                                               <  4:143375‑M1/23‑1 (MQ=255)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑Ga                                                                                                                       <  5:314086‑M1/30‑1 (MQ=255)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑Ga                                                                                                                       <  6:294014‑M1/30‑1 (MQ=255)                                                  ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCgg                                                                                             <  4:247735‑M1/56‑1 (MQ=255)                                                    ggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGc                                                                                            <  4:239882‑M1/57‑1 (MQ=255)                                                           ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCaaacaac                                                                                     <  3:199931‑M1/64‑3 (MQ=255)                                                                    gcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                            >  3:247735‑M1/76‑148 (MQ=255)                                                                          tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGcc                                                                     <  6:44151‑M1/80‑1 (MQ=255)                                                                           acaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCg                                                                    <  3:164434‑M1/81‑1 (MQ=255)                                                                             aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                               >  1:62396‑M1/67‑137 (MQ=255)                                                                             aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                               <  2:62396‑M1/70‑1 (MQ=255)                                                                               acaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCACGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCa                                                                <  2:23486‑M1/85‑1 (MQ=255)                                                                                   ggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTc                                                             <  3:11978‑M1/88‑1 (MQ=255)                                                                                      ggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                           >  8:55889‑M1/58‑84 (MQ=255)                                                                                       gtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAt                                                        >  3:239882‑M1/57‑149 (MQ=255)                                                                                        tcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAtt                                                       <  2:270058‑M1/94‑1 (MQ=255)                                                                                          gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTcc                                                     >  5:44151‑M1/54‑149 (MQ=255)                                                                                                gactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgcc                                               >  1:23486‑M1/48‑149 (MQ=255)                                                                                                           gagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                     <  3:15060‑M1/112‑1 (MQ=255)                                                                                                           gagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCGC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                     <  5:198936‑M1/112‑1 (MQ=255)                                                                                                              ggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                                  >  1:138500‑M1/34‑132 (MQ=255)                                                                                                              ggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                                  <  2:138500‑M1/99‑1 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCaa                             >  4:164434‑M1/28‑147 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcg                           >  4:11978‑M1/28‑149 (MQ=255)                                                                                                                                     agcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTACAACGCCGACCCCTCAAAATTCACACGCCGCCACCGCAAAATTCCAACGCCTCCGCCCCACgaaag          <  2:178280‑M1/139‑2 (MQ=255)                                                                                                                                              cCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCGTACAATCCTCCGGCAAACACCTCAAAATTCAAACCCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaacaa  >  1:178280‑M1/2‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAA  >  NC_002947/4808032‑4808320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.