New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5439307 =	41 (0.880)	8 (0.170)	8/278	4.3	16.3%	coding (49/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase
	?	NC_002947	5439336 =	42 (0.910)					coding (20/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCGCAGCAGATCGAGGGCAGCAATGCCGA  >  NC_002947/5439160‑5439453                                                                                                                                                     |                                                                                                                                                   ggTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCa                                                                                                                                                   <  5:327268/149‑1 (MQ=255)       cGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCGCGCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCcg                                                                                                                                              <  1:67345/149‑1 (MQ=255)        gCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCcgcg                                                                                                                                            >  4:208926/1‑149 (MQ=255)        gCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGATCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCcgcg                                                                                                                                            >  4:291590/1‑149 (MQ=255)            ggAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGACCAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTg                                                                                                                                        <  3:208926/149‑1 (MQ=255)              aaTGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACGGGGGCAGCAGGTCGAACGGTTTGTTGACCAGGATCCGGCGCGGCGCG‑GCGGGGGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTggg                                                                                                                                      <  3:202717/149‑1 (MQ=255)                     aTGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGgcggcg                                                                                                                               >  7:235739/1‑149 (MQ=255)                         aGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGgcggcgcggc                                                                                                                           <  8:235739/149‑1 (MQ=255)                         aGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGgcggcgcg                                                                                                                             >  7:262799/1‑147 (MQ=255)                             cTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGt                                                                                                                       >  7:298150/1‑149 (MQ=255)                                gAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTAc                                                                                                                    >  4:179985/1‑149 (MQ=255)                                 aGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACg                                                                                                                   <  3:288561/149‑1 (MQ=255)                                    gTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCCCCCCAGGGGGCGGCCCGCCATGTTACgggg                                                                                                                >  6:47696/1‑149 (MQ=255)                                          cgcCCTTCACCGGCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAg                                                                                                          <  5:288470/149‑1 (MQ=255)                                           gcCGTTCCCCGTCGCTTAAGTGGGTCCGCACGTCGACCGGTTTGTTGAACTGGTGCTGGCGCGGCTGG‑GGGGGGGGCGCCTTGGCGTGGGGAGGGGGGCGGGCGGCTGGCCGCGCCTGGGCGCGGCGCGGCTTGTTACGGGGTCGCAGt                                                                                                         <  1:183939/149‑1 (MQ=255)                                                 cACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACAt                                                                                                    <  3:179985/148‑1 (MQ=255)                                                     gTCGCTGACCTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATc                                                                                               <  5:328925/149‑1 (MQ=255)                                                       cGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCACGGCTTGTTACGGGGTGGCAGTGACATGGATCCt                                                                                             >  6:118123/1‑149 (MQ=255)                                                        gCTGAACTGGGTCAGCACGTCGAACGGTTTNTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCTGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCt                                                                                             >  1:26305/1‑148 (MQ=255)                                                          tGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGgcggcgcgg                                                                                                                            >  8:184815/1‑115 (MQ=255)                                                                 ggTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGGCTGGGGGCGGGGCGGCTTGTTACGGGGGGGCCGTGACATGGATCCTCAGCGGAAcg                                                                                   >  6:13640/1‑149 (MQ=255)                                                                     cgCAGGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCGCG‑GCGGGGGGCGCGTTGGCCTGGCGACGCGGGCCGGCGTCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAAcggcgg                                                                               <  3:180218/148‑1 (MQ=255)                                                                         cGTCGAACGGTTTGTTTAACAGGATCAGGCGCTGCTGG‑GCGGGTGGCGCCTTGGCCTGGCTACGCGGGCCGGCGGCTGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCa                                                                           <  3:291590/149‑1 (MQ=255)                                                                             gAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGt                                                                                                         <  8:73079/115‑1 (MQ=255)                                                                                               gATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCCTCGAAGCTGCGCAGTTTAcgc                                                      >  6:102755/1‑148 (MQ=255)                                                                                                aTCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCTGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGa                                                    <  2:26305/149‑1 (MQ=255)                                                                                                       gcgGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCa                                                              <  5:300875/132‑1 (MQ=255)                                                                                                       gcgGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCa                                                              >  6:300875/1‑132 (MQ=255)                                                                                                            tCG‑GCGGGTGGCGCCTTGGCCTGGCGACGGGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATGGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGtt                                        <  4:184940/149‑1 (MQ=255)                                                                                                              g‑gcggGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGtt                                        >  3:310548/1‑147 (MQ=255)                                                                                                                         gcCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGaa                                                                      <  6:146459/107‑1 (MQ=255)                                                                                                                         gcCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGaa                                                                      >  5:146459/1‑107 (MQ=255)                                                                                                                         gcCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGtt                                                           >  7:239657/1‑118 (MQ=255)                                                                                                                         gcCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGtt                                                           <  8:239657/118‑1 (MQ=255)                                                                                                                          ccTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCACCGAGCTCAACTCGCTgcac                           <  8:298150/149‑3 (MQ=255)                                                                                                                          ccTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCACGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTgcgc                           <  5:118123/149‑1 (MQ=255)                                                                                                                           cTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTgcg                            >  5:276342/1‑147 (MQ=255)                                                                                                                                ccTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCgcag                         >  8:89818/1‑145 (MQ=255)                                                                                                                                     cGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCGCAGCAGATCGAg                <  5:13640/149‑1 (MQ=255)                                                                                                                                           gggCCGGCGGCAGGCCGCGCCTAGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCGCAGCAGATCGAGGgcag           >  6:241734/1‑148 (MQ=255)                                                                                                                                                   ggcAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCGCAGCAGATCGAGGGCAGCAATGCCGa  >  5:63457/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCTCG‑GCGGGTGGCGCCTTGGCCTGGCGACGCGGGCCGGCGGCAGGCCGCGCCTGGGGGCGGCGCGGCTTGTTACGGGGTGGCAGTGACATGGATCCTCAGCGGAACGGCGGCTCATCGAAGCTGCGCAGTTTACGCGAGTGCAGCGAGTTGAGCTCGGTGCGCAGCAGATCGAGGGCAGCAATGCCGA  >  NC_002947/5439160‑5439453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.