| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 92.8% | 262.2 / 12.9 | 83 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base G (39/38); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 92.8% | 251.1 / 13.0 | 83 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base A (39/38); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGT‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070098‑1070380 || ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt > 1:232849/1‑149 (MQ=255) aCGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGT‑‑Ga < 2:232849/147‑1 (MQ=255) cgccgcCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGT‑‑Gagat < 1:325542/149‑4 (MQ=255) gccgccGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt > 8:240340/1‑143 (MQ=255) ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGT‑‑Gagatcg < 1:183994/149‑6 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt < 8:141294/132‑1 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt > 7:141294/1‑132 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCcgcgc > 8:241565/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCcgcgc < 5:170976/149‑1 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTGTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGAGCGGGTGTGTTCGTAAGGGGGATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGcgcgccgcgc > 8:190264/1‑149 (MQ=255) tctcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt < 6:2188/129‑1 (MQ=255) tctcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑tgt > 5:2188/1‑129 (MQ=255) tcgcGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCGGAAGACGGCTCGCC‑AGGCCAAGGGCTGAGCGGGGGTGGTCGTACGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCgcggg < 7:190264/146‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCgcgggcg < 2:416146/147‑1 (MQ=255) gTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCgcggcg > 6:27569/1‑149 (MQ=37) tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCg < 5:27569/149‑1 (MQ=37) tGCTGATCCCGGCATGGATCGCTGTGCTGTGGGGGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCTTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGC‑CGCGCGGCGCTCGa < 7:230950/149‑1 (MQ=25) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGa > 6:242620/1‑149 (MQ=255) tGATCCCGGCATGGATCGCTGTCCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGAtc > 7:269894/1‑149 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGAtct > 7:205003/1‑148 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtct < 4:419339/148‑1 (MQ=38) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCA‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCCAtct > 8:81847/1‑148 (MQ=39) ccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGGTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTcaca < 1:351889/149‑1 (MQ=255) ccGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTca > 5:53378/1‑147 (MQ=255) gCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGc > 6:427662/1‑149 (MQ=255) ggATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCTAt > 4:63674/1‑148 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCg > 7:407481/1‑132 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCg < 8:407481/132‑1 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtct > 2:381710/1‑136 (MQ=38) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGAtct < 1:381710/136‑1 (MQ=38) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGaaaac < 5:289993/149‑3 (MQ=21) tgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCGAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCAGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCt > 1:71375/1‑148 (MQ=38) ctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 2:71375/148‑1 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 1:360090/148‑1 (MQ=255) ggtggCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCAt < 5:427662/148‑1 (MQ=255) gtggCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGc < 5:242620/149‑1 (MQ=255) cTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CAGTGA‑‑GATAGAGAGCCTCGCGGGCGGCGCTCGATCTAACAGGCCATGAAAGCCTAAAGGCATGAGTCt > 1:185775/1‑149 (MQ=255) cTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCt > 3:82974/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg > 6:26391/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCACGCGTcag > 5:239992/1‑147 (MQ=38) cAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggca > 1:153737/1‑148 (MQ=255) gCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc < 2:349927/149‑1 (MQ=255) gaagaaGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 5:190099/1‑148 (MQ=255) aagaagGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTC‑‑TGA‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGa > 2:137335/1‑149 (MQ=255) aagaagGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 6:229613/127‑1 (MQ=255) agaagGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAc < 7:277399/149‑1 (MQ=255) aagGCTCCCC‑AGGCCAAGGGCTGAGCCGGTTTGTTCGTAAGGGGTATGCCGTTTGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGACCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGAcgc < 5:70043/149‑1 (MQ=38) ggCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGt > 8:49399/1‑149 (MQ=255) tCGCC‑AGGACAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc > 3:141615/1‑149 (MQ=255) gCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc > 7:337314/1‑149 (MQ=255) ggCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTc > 6:248286/1‑148 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcggc > 8:193704/1‑129 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcggc < 7:193704/129‑1 (MQ=255) ccAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑CTATGA‑‑GATCCAGCCCCGCGCGGGCGGAGCTCGATCTAACAGGAGATGAAAGCCTAAACGCATTCGTCAGGCGGACCTGACCCGTTCCCCtaac > 2:231949/1‑144 (MQ=255) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg < 8:269894/149‑1 (MQ=255) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg < 6:190099/149‑1 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg < 1:96529/110‑1 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAg > 2:96529/1‑110 (MQ=255) gggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc < 2:30951/149‑1 (MQ=255) gCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCt < 8:205003/149‑1 (MQ=255) gATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCaa > 7:239836/1‑149 (MQ=255) tCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGAATGCGTCTGCCGGCCCTGACGCGTTCACCTTCCATGCCCCACAAtg > 5:93222/1‑149 (MQ=38) cGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGc < 1:47230/139‑1 (MQ=255) cGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGc > 2:47230/1‑139 (MQ=255) gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct < 7:240340/149‑1 (MQ=255) gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgc < 6:53378/148‑1 (MQ=255) gTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc > 1:341219/1‑149 (MQ=255) gTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc > 4:423346/1‑149 (MQ=255) cGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt > 6:211263/1‑123 (MQ=255) cGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt < 5:211263/123‑1 (MQ=255) aaGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTc < 2:224604/115‑1 (MQ=255) aaGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTc > 1:224604/1‑115 (MQ=255) aaGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAg > 5:426803/1‑149 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCCGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac > 5:84449/1‑149 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac < 7:241565/149‑1 (MQ=255) acgcaTGCCTTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTAACGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac > 3:176895/5‑149 (MQ=17) gTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGATCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgc < 1:231949/149‑1 (MQ=255) tATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgca > 1:56028/1‑149 (MQ=255) aTGCCTTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCCTGCCCCTCAAAGCTGCCTCCGCCAAgcacgcc > 8:339672/1‑147 (MQ=21) gCCTTTAGGCTTTCATCGC‑‑C‑‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAg > 8:97972/1‑149 (MQ=21) ccGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTc < 8:397530/132‑1 (MQ=255) ccGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTc > 7:397530/1‑132 (MQ=255) cGTTAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCCCCGCGTGGGCGGCCCTCGATCTAACAGGCGATGAAAGCCAAAAGGCATCCCTGTGGCGGCCCAGGCGCGGTCCCCATCCATGGCCCACAAAGCTGCCTACGCCCAGCACGCACActg > 4:55556/1‑149 (MQ=255) ttAGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 6:426803/149‑1 (MQ=255) aGGTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggtg < 7:81847/148‑1 (MQ=255) ggTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 7:49399/149‑1 (MQ=255) ggTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 3:423346/149‑1 (MQ=255) gTTTTCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTa < 8:239836/148‑1 (MQ=255) ttCGGCGC‑‑C‑‑TGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg < 8:337314/148‑1 (MQ=255) || CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCC‑AGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑‑C‑‑TGT‑‑GATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070098‑1070380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |