New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1731163 =	47 (0.640)	13 (0.220)	8/226	6.8	25.6%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	38 (0.640)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
Rejected: Coverage evenness skew score above cutoff.

CTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1731331‑1731163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGT  >  NC_002947/1731255‑1731402                                                                                                                                                                                                                                                                                                                               CTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGGAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGC                                                                                                                                                                          >  5:129361/1‑149    TCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCG                                                                                                                                                                         <  6:383769/147‑1      GTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGC                                                                                                                                                                      <  8:328399/148‑1       TCGCGGCCCAAGCCCGCAGAATAGGCTGCGCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGTCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGT                                                                                                                                                                    <  5:313122/149‑1             CCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                                              <  7:125082/149‑1              CCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                                              >  7:121964/1‑148                                     CAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG                                                                                                                                                                        >  6:44168/1‑115                                     CAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGG                                                                                                                                                                        <  5:44168/115‑1                                                                                              GCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGAC                                                                              >  2:138762/1‑148                                                                                                CCGCTCGCACCGGCTTGGCCCAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTT                                                                                                              <  5:375392/114‑1                                                                                                CCGCTCCCACCGGCTTGGCGCAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTT                                                                                                              >  6:375392/1‑114                                                                                                CCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGAC                                                                           >  7:259073/1‑149                                                                                                CCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTT                                                                                                  >  5:132160/1‑126                                                                                                CCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTT                                                                                                  <  6:132160/126‑1                                                                                                  GCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAG                                                                         >  1:184897/1‑149                                                                                                  GCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGAC                                                                           <  6:103085/147‑1                                                                                                  GCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGAC                                                                           >  5:103085/1‑147                                                                                                   CTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGTCCAGGCAACTTCAAGCCTGCTGCG                                                                                                                 >  2:400392/1‑108                                                                                                   CTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGTCCAGGCAACTTCAAGCCTGCTGCG                                                                                                                 <  1:400392/108‑1                                                                                                                       GCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGC                                                    <  2:184897/149‑1                                                                                                                             AGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCTAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACAT                                               <  1:138762/148‑1                                                                                                                                              GTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAG                                                          <  3:243432/120‑1                                                                                                                                              GTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAG                                                          >  4:243432/1‑120                                                                                                                                                attcGCGGGCACGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAG                            >  1:238166/5‑148                                                                                                                                                GGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCA                                <  1:131663/144‑1                                                                                                                                                GGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCA                                >  2:131663/1‑144                                                                                                                                                   AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGC                                                                                    >  6:335745/1‑89                                                                                                                                                   AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGC                                                                                    <  5:335745/89‑1                                                                                                                                                     CGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGACAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACAT                      >  8:137596/1‑149                                                                                                                                                        GCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGACAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGC                   <  7:137596/149‑1                                                                                                                                                            GCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGAC                                                                           >  2:207711/1‑89                                                                                                                                                            GCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGAC                                                                           <  1:207711/89‑1                                                                                                                                                             CCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCC              <  7:328399/149‑1                                                                                                                                                              cgGCGAATGGGCTGCACAGGCCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGACAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTTCAC                               <  2:198014/129‑1                                                                                                                                                              CCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACC               >  8:143414/1‑147                                                                                                                                                              CCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACC               >  5:363398/1‑147                                                                                                                                                              CCGCGAATGGGCTGCACAGGGCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGACAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAC                               >  1:198014/1‑131                                                                                                                                                               CGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACC               >  8:312419/1‑146                                                                                                                                                                GCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTCGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAG            >  1:317238/1‑148                                                                                                                                                                   AATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCC                                                                  <  2:289258/91‑1                                                                                                                                                                   AATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTGTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCC                                                                  >  1:289258/1‑91                                                                                                                                                                    ATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAACGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCG       >  4:416942/1‑149                                                                                                                                                                     TGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGC      <  5:383769/149‑1                                                                                                                                                                         CTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGT  <  8:125082/149‑1                                                                                                                                                                         CTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGT  <  2:248219/149‑1                                                                                                                                                                                                                                                                                                                               CTGTCGTCGCTGCCCAAGCCCGCAGAAAAGGCTGCCCAAGCGCAGCAGGCTTGAAGTTGCCTGGGCCGACCTGTGCAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1731331‑1731163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCATGT  >  NC_002947/1731255‑1731402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.