| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,867,733:1 | +C | 10.1% | intergenic (‑28/+24) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,867,733 | 1 | . | C | 10.1% | 282.0 / 29.8 | 79 | intergenic (‑28/+24) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base . (38/33); new base C (3/5); total (41/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.08e-01 | |||||||||||
TGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867590‑5867881 | tGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCg > 1:118922/1‑149 (MQ=255) gCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGc > 1:193110/1‑149 (MQ=255) aGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGccc > 8:287743/1‑149 (MQ=255) ggTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGcccc > 2:317240/1‑149 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCGCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc < 1:317240/149‑1 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCACTGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc > 3:263092/1‑149 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 7:4280/149‑1 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc > 4:329165/1‑149 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc > 1:340758/1‑149 (MQ=255) ctcaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc < 1:314282/146‑1 (MQ=255) aaaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCg < 3:87641/149‑1 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg > 8:108606/1‑149 (MQ=255) cGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 4:316370/149‑1 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGtttt < 2:22808/149‑4 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg > 8:337129/1‑148 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg > 3:368059/1‑148 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGGGCGGATGCCTGTGCGGTTTCCCTGCATCGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTCTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGtttt < 5:120489/149‑4 (MQ=255) agcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt < 3:359876/149‑1 (MQ=255) tCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTaa > 2:120857/1‑148 (MQ=255) ggCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTc < 5:91577/149‑1 (MQ=255) tGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCg > 5:348356/1‑147 (MQ=255) gTGCGGATGCCGGTTCGGTTTCACTGCAAAGTGACGTTATCAATGACGTCTCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGAAAAAACGGCAGGGG‑TATAGCCCCTGCAGTGTGATTAATCATTCTGGTTTCGCCCTac > 8:332692/1‑147 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGc > 4:258686/1‑149 (MQ=255) gATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc < 3:258686/149‑1 (MQ=255) gATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc < 3:315133/149‑1 (MQ=255) gATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc > 4:80548/1‑149 (MQ=255) ccGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGAt < 7:325517/148‑1 (MQ=255) cGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc < 7:79014/149‑1 (MQ=255) ggTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGcc > 3:259006/1‑149 (MQ=255) tttCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCATAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCcca < 1:120857/149‑1 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTCAATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac > 1:101197/1‑147 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccacca < 4:368059/148‑1 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAg < 7:337129/149‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 8:54569/1‑148 (MQ=255) ccGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 3:329165/149‑1 (MQ=255) cGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAgg > 3:274845/1‑149 (MQ=255) cGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 4:252820/148‑1 (MQ=255) gTTATCAATGACGTTGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAgga > 7:311778/1‑148 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGTGTTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGc > 1:260024/1‑149 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGc > 6:355582/1‑148 (MQ=255) aTCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCAc > 6:326775/1‑149 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 1:382027/1‑149 (MQ=255) tGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACt < 2:101197/149‑1 (MQ=255) tGACGTCGCGCACCAGGTCCAGATACTTT‑TTC‑ATCGCTTACCTTTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACt < 2:182471/149‑1 (MQ=255) tCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 2:89104/1‑149 (MQ=255) gACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTg < 6:281005/63‑1 (MQ=255) gACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTg > 5:281005/1‑63 (MQ=255) cAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGc < 4:274845/149‑1 (MQ=255) ggTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGcac < 2:193110/149‑1 (MQ=255) ggTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCAGCCGTCGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGTCCACCGACTATCATCGCAAAGca > 7:298072/1‑148 (MQ=255) gTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCACCATAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca > 3:37455/1‑147 (MQ=255) tACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTg < 2:340758/149‑1 (MQ=255) c‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg > 3:92649/1‑47 (MQ=255) c‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg < 4:92649/47‑1 (MQ=255) c‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGTGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 7:332692/148‑1 (MQ=255) aTGGCTTACCTGTAGCAAAAAAGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagt > 3:88088/1‑149 (MQ=255) ggCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagt > 6:70066/1‑147 (MQ=255) gCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 5:355582/148‑1 (MQ=255) cTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc < 6:356584/149‑1 (MQ=255) aCCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATGAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag > 3:243501/1‑149 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag < 5:326775/148‑1 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccag < 4:147865/148‑1 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc > 6:264912/1‑144 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagc < 5:264912/144‑1 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAACCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagcc < 7:108606/149‑1 (MQ=255) tGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagcc > 6:145117/1‑148 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTAAGCCAGCCGAAc < 2:118922/148‑1 (MQ=255) aaaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgc > 3:336091/1‑148 (MQ=255) aaacCGGCAGGGG‑GATCGCCCCTGCCGTGGGCTTAATCAGGCGGGTTGCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 4:263092/149‑1 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 6:348356/149‑1 (MQ=255) ccaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGATGCCACCGACTATCATCGGAATGCACAg > 4:298235/3‑116 (MQ=255) aaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGAt < 2:382027/149‑1 (MQ=255) caCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATAAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga > 8:360044/2‑128 (MQ=255) aCGGCAGGGG‑GATCGCCCCTGCCGTGGGATAAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac < 2:32235/73‑1 (MQ=255) aCGGCAGGGG‑GATCGCCCCTGCCGTGGGATAAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac > 1:32235/1‑73 (MQ=255) ggCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTaa > 8:32742/1‑149 (MQ=255) ggCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTaa > 3:362286/1‑149 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga > 7:36927/1‑128 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 8:36927/128‑1 (MQ=255) g‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGtt < 4:259006/149‑1 (MQ=255) g‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCACCATAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAATGAGCCAGCCGAACGCGATGTAACCGAGtt < 4:37455/149‑1 (MQ=255) | TGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGT‑TTC‑ATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867590‑5867881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |