New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 416638	71 (1.150)	4 (0.070)	4/256	NT	5.7%	coding (348/1125 nt)	waaG	lipopolysaccharide glucosyltransferase I
	?	NC_002947	= 416677	65 (1.090)					coding (387/1125 nt)	waaG	lipopolysaccharide glucosyltransferase I

AGAAGCTCAGCGCCTGGATGGCCGCCGACCTGGCCAAGCGCCCGGTCGACCGCCTGATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/416487‑416638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCACCGCGCAGGGTCTGCGCCTTGTCTTCGAAGCAGCCGTCGGCGGCGTAGTACACGTCCAGCCCTGGCATCTTGTTGAAGCCGATCAGGCGGTCGACC  <  NC_002947/416677‑416530                                                                                                                                                                                                                                                                                                              AGAAGCTCAGCGCCTGGATGGCCGCCGACCTGGCCAAGCGCCCGGTCGACCGCCTGATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTAC                                                                                                                                                         <  1:147369/149‑1   AAGCTCAGCGCCTGGATGGCCGCCGACCTGGCCAAGCGCCCGGTCGACCGCCTGATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACC                                                                                                                                                        <  1:382241/148‑1                                            GGTCGACCGCCTGATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGG                                                                                                              <  2:172560/149‑1                                                         ATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCAC                                                                                                 <  8:204657/149‑1                                                           CGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGC                                                                                                     <  7:189044/143‑1                                                           CGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGC                                                                                                     >  8:189044/1‑143                                                                                                                                                    ACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCACCGCGCAGGGTCTGCGCCTTGTCTTCGAAGCAGCCGTCGGCGGCGTAGTACACGTCCAGCCCTGGCATCTTGTTGAAGCCGATCAGGCGGTC      <  5:300127/149‑1                                                                                                                                                    ACCGCACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCACCGCGCAGGGTCTGCGCCTTGTCTTCGAAGCAGCCGTCGGCGGCGTAGTACACGTCCAGCCCTGGCATCTTGTTGAAGCCGATCAGGCGGTC      <  6:374961/149‑1                                                                                                                                                        CACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCACCGCGCAGGGTCTGCGCCTTGTCTTCGAAGCAGCCGTCGGCGGCGTAGTACACGTCCAGCCCTGGCATCTTGTTGAAGCCGATCAGGCGGTCGACC  <  3:158663/149‑1                                                                                                                                                                                                                                                                                                              AGAAGCTCAGCGCCTGGATGGCCGCCGACCTGGCCAAGCGCCCGGTCGACCGCCTGATCGGCTTCAACAAGATGCCAGGGCTGGACGTGTACTACGCCGCCGACGGCTGCTTCGAAGACAAGGCGCAGACCCTGCGCGGTGGGCTGTACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/416487‑416638 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcACGCTCGTACTCGGCAAAGTGCCGGTAGCGGCCCCAGCGGCGGTACAGCCCACCGCGCAGGGTCTGCGCCTTGTCTTCGAAGCAGCCGTCGGCGGCGTAGTACACGTCCAGCCCTGGCATCTTGTTGAAGCCGATCAGGCGGTCGACC  <  NC_002947/416677‑416530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.