New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	477781 =	67 (1.080)	4 (0.070)	3/254	NT	6.2%	coding (39/510 nt)	PP_0393	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
	?	NC_002947	477819 =	57 (0.960)					coding (77/510 nt)	PP_0393	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

GGCAACGCGGTTTGCCCCGTCACCACGAAGTTGATGAACGGCCCGCTCTTGATGCCCACCGCCTGGCTTTCGAAGGCCGGCGAACAGCGCATGTCAGTCAGGATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/477933‑477781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatgCGTTGGCTGGCATCCTGACTGACATGCGCTGTTCGCCGGCCTTCGAAAGCCAGGCGGTGGGCATCAAGAGCGGGCCGTTCATCAACTTCGTGGTGACGGGGCAAACCGCGTT  >  NC_002947/477819‑477930                                                                                                                                                                                                                                                                           GGCAACGCGGTTTGCCCCGTCACCACGAAGTTGATGAACGGCCCGCTCTTGATGCCCACCGCCTGGCTTTCGAAGGCCGGCGAACAGCGCATGTCAGTCAGGATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTC                                                                                                                      >  8:330815/1‑149  GCAACGCGGTTTGCCCCGTCACCACGAAGTTGATGAACGGCCCGCTCTTGATGCCCACCGCCTGGCTTTCGAAGGCCGGCGAACAGCGCATGTCAGTCAGGATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTC                                                                                                                      >  6:298413/1‑148   CAACGCGGTTTGCCCCGTCACCACGAAGTTGATGAACGGCCCGCTCTTGATGCCCACCGCCTGGCTTTCGAAGGCCGGCGAACAGCGCATGTCAGTCAGGATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGA                                                                                                                    <  7:160420/149‑1                                                                                                       ATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGAT                                                                                                                   <  7:311836/50‑1                                                                                                       ATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGAT                                                                                                                   >  8:311836/1‑50                                                                                                                 ACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATGCGTTGGCTGGCATCCTGACTGCCATGCGCTGTTCGCCGGCCTTCGAAAGCCAGGCGGTGGGCATCAAGAGCGGGCCGTGCATCAACTTCGTGGTGACGGGGCAAACCG      >  1:289127/1‑149                                                                                                                    CATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATGCGTTGGCTGGCATCCTGACTGACATGCGCTGTTCGCCGGCCTTCGAAAGCCAGGCGGTGGGCATCAAGAGCGGGCCGTTCATCAACTTCGTGGTGACGGGGCAAACCGCGT   >  8:296945/1‑149                                                                                                                     ATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATGCGTTGGCTGGCATCCTGACTGACATGCGCTGTTCGCCGGCCTTCGAAAGCCAGGCGGTGGGCATCAAGAGCGGGCCGTTCATCAACTTCGTGGTGACGGGGCAAACCGCGTT  >  6:394509/1‑149                                                                                                                     ATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATGCGTTGGCTGGCATCCTGACTGACATGCCCTGTTCGCCGGCCTTCGAAAGCCAGTCGGTGGGCATCAAGAGCGGGCCGTTCATCAACTTCGTGGTGACGCGGCAAACCGCGTT  >  3:31971/1‑149                                                                                                                                                                                                                                                                           GGCAACGCGGTTTGCCCCGTCACCACGAAGTTGATGAACGGCCCGCTCTTGATGCCCACCGCCTGGCTTTCGAAGGCCGGCGAACAGCGCATGTCAGTCAGGATGCCAGCCAACGCATCGAGCCCGGCGCACAAATGCGCCTCACGGTCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/477933‑477781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatgCGTTGGCTGGCATCCTGACTGACATGCGCTGTTCGCCGGCCTTCGAAAGCCAGGCGGTGGGCATCAAGAGCGGGCCGTTCATCAACTTCGTGGTGACGGGGCAAACCGCGTT  >  NC_002947/477819‑477930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.