| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 498943 = | 52 (0.840) | 4 (0.070) | 4/252 | NT | 6.1% | coding (417/630 nt) | uhpA | two‑component system response regulator UhpA |
| ? | NC_002947 | 498995 = | 74 (1.260) | coding (469/630 nt) | uhpA | two‑component system response regulator UhpA | |||||
ACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499097‑498943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggtgTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGA > NC_002947/498995‑499140 ACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGAT > 2:54742/1‑149 CTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGGGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGG > 1:271926/1‑149 CTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGG > 3:56016/1‑149 CTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCG < 1:54742/148‑1 CTGCATCAGGCGTGCCTTGTGGGTGCGGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCG < 5:4044/148‑1 aATCACGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGATGCGAGATGTCGGAGACGTTGGCGCCATGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGAGTGTGCAACGGCCGGGATTCGGT > 5:266213/2‑147 GTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTG < 3:50097/140‑1 GTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTG > 4:50097/1‑140 CTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCC > 7:72515/1‑149 TCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCT > 4:258675/1‑149 GCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTG < 3:258675/149‑1 CAACGGCCGGGATTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGG < 8:72515/149‑1 GGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAACGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG < 6:394159/148‑1 GGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATG < 7:65251/148‑1 GTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGGAGTTGGCGCTGTCTAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGA < 3:212852/149‑1 TGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTG < 2:94532/122‑1 TGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTG > 1:94532/1‑122 GTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGT < 7:207740/132‑1 GTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGT > 8:207740/1‑132 GTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCG > 1:168721/1‑118 GTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCG < 2:168721/118‑1 ACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCCGAGAGCAGTGTGTGCAACGGCCGGGATTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499097‑498943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggtgTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGA > NC_002947/498995‑499140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |