New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 60032779 (1.270)4 (0.070) 4/256 NT 5.3% coding (154/480 nt) nrdR DNA‑binding transcriptional repressor NrdR
?NC_002947 = 600361 67 (1.120)coding (188/480 nt) nrdR DNA‑binding transcriptional repressor NrdR

CCTTTTGCGGTGCCAACGACACCAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/600199‑600327
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCGGCGGTTTCGAAGGTGGTGAAGCGCTCGCCGCAGGCCACGCATTCACGGCGGCGGCGCACCTGCTCGCCCTCGGCGACGAGGCGAGAGTCGATGACCTTGGTGTCGT  <  NC_002947/600361‑600214
                                                                                                                                                                                                                                                                                      
CCTTTTGCGGTGCCAACGACACCAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGGCGCGTGCCGTCCTGCTTGA                                                                                                                                    >  8:107575/1‑148
                   CACCAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGCAAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGGCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GC                                                                                                               <  6:279873/149‑1
                      CAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGTGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG                                                                                                                                                       >  7:182070/1‑107
                      CAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGTGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG                                                                                                                                                       <  8:182070/107‑1
                      CAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGGCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCG                                                                                                            <  2:177037/149‑1
                          GTCATCGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGGCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCGGCGG                                                                                                        <  7:107575/149‑1
                               CGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG                                                                                                                                                       >  1:350280/1‑98
                               CGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG                                                                                                                                                       <  2:350280/98‑1
                                                                                                                             CTGGCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCAGGCTCGGCGGTTTCGAAGGTGGTGAAGCGCTCGCCGCAGGCCACGCATTCACGGCGGCGGCGCACCTGCTCGCCCTCGGCGACGAGGCGAGAGTCGATGACCTTGGTG      >  1:74724/1‑149
                                                                                                                                GCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCGGCGGTTTCGAAGGTGGTGAAGCGCTCGCCGCAGGCCACGCATTCACGGCGGCGGCGCACCTGCTCGCCCTCGGCGACGAGGCGAGAGTCGATGACCTTGGTGTCGT  <  5:132195/149‑1
                                                                                                                                GCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCGGCGGTTTCGAAGGTGGTGAAGCGCTCGCCGCAGGCCACGCATTCACGGCGGCGGCGCACCTGCTCGCCCTCGGCGACGAGGCGAGAGTCGATGACCTTGGTGTCGT  <  6:157763/149‑1
                                                                                                                                                                                                                                                                                      
CCTTTTGCGGTGCCAACGACACCAAGGTCATCGACTCTCGCCTCGTCGCCGAGGGCGAGCAGGTGCGCCGCCGCCGTGAATGCGTGGCCTGCGGCGAGCGCTTCACCACCTTCGAAACCGCCGAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/600199‑600327
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCGCGTGCCGTCCTGCTTGATCAGCCGGGGCAGCACCA‑GCTCGGCGGTTTCGAAGGTGGTGAAGCGCTCGCCGCAGGCCACGCATTCACGGCGGCGGCGCACCTGCTCGCCCTCGGCGACGAGGCGAGAGTCGATGACCTTGGTGTCGT  <  NC_002947/600361‑600214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.