New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 655942	73 (1.180)	4 (0.070)	4/260	NT	5.2%	coding (401/1356 nt)	PP_0563	two‑component system response regulator
	?	NC_002947	= 655973	75 (1.240)					coding (370/1356 nt)	PP_0563	two‑component system response regulator

GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/655792‑655942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGC  <  NC_002947/655973‑655850                                                                                                                                                                                                                                                                                     GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTC                                                                                                                                <  2:322009/149‑1   GCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT                                                                                                                              >  3:32036/1‑149   GCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT                                                                                                                              >  3:56388/1‑149   GCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT                                                                                                                              <  8:328701/149‑1    CCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT                                                                                                                              >  4:27065/1‑148                                    TGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAG                                                                                             <  3:171286/149‑1                                         GCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTT                                                                                        <  3:227586/149‑1                                                           GCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGAC                                                                                          >  3:14678/1‑129                                                           GCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGAC                                                                                          <  4:14678/129‑1                                                                                                                                                     CCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGC  <  3:278105/127‑1                                                                                                                                                     CCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGC  >  4:278105/1‑127                                                                                                                                                                                                                                                                                     GCGCCGGCCAGTACACGCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/655792‑655942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctACCCGCCTTGCCGCAGTGCGCGCCGGCGGTCAGGACTTTCTCACCGGCAGTCTGGAAGCTTCCAGCCTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGC  <  NC_002947/655973‑655850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.