New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 858040	57 (0.920)	4 (0.070)	4/250	NT	6.3%	coding (784/1443 nt)	phr	deoxyribodipyrimidine photolyase
	?	NC_002947	= 858071	65 (1.120)					coding (753/1443 nt)	phr	deoxyribodipyrimidine photolyase

GGCGTCACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/857885‑858040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccccgCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGCGAGTTC  <  NC_002947/858071‑858029                                                                                                                                                                                                         GGCGTCACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACT                                                    <  5:44077/149‑1   CGTCACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCG                                                  <  4:238333/149‑1   CGTCACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCG                                                  >  8:326534/1‑149      CACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCC                                               >  2:173160/1‑149                                             GGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCGCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGC        <  7:320314/149‑1                                                 GCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCGCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGCGAG     <  2:126795/148‑1                                                               GATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCGCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGCGAGTTC  >  5:12826/1‑137                                                               GATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCGCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGCGAGTTC  <  6:12826/137‑1                                                                                                                                                                                                         GGCGTCACGCCAGGGCAGGGCTTCGGTCTGGGCGCGGAAGGCGCGGTGGCGCGAGACCTGTGGATAACCGCTCAGGATGTGCTTGTAGAACTCACGCCAGAGTAGCTCATTGATCCAGGTCTGCACGCCTGTGCTGCCACTGTCGAACTCGCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/857885‑858040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccccgCCAATGCTTGCACGGTGCACTGGCCGGCAACCGGGGCGAGTTC  <  NC_002947/858071‑858029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.