New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1118435 =	80 (1.290)	4 (0.070)	4/248	NT	5.0%	coding (280/429 nt)	holC	DNA polymerase III subunit chi
	?	NC_002947	1118521 =	76 (1.320)					coding (194/429 nt)	holC	DNA polymerase III subunit chi

GCCGAACAGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGGCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1118591‑1118435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctcggcgAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGCCGCG  >  NC_002947/1118521‑1118668                                                                                                                                                                                                                                                                                                                   GCCGAACAGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGGCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAA                                                                                                                                                              >  5:176278/1‑149  CCGAACAGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGGCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAAC                                                                                                                                                             >  1:385985/1‑149     AACAGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGGCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTC                                                                                                                                                          >  8:277008/1‑149        AGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGTCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGC                                                                                                                                                       <  4:157535/149‑1                                                                   GACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCAC                                                                                            >  7:97067/1‑149                                                                         GCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGCCAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCT                                                                                      >  3:258466/1‑149                                                                                                                       ACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCA                                        <  8:97067/149‑1                                                                                                                           CGGCGAGCACCACGGTCTGCTGATCAACCTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCT                                    <  4:258466/149‑1                                                                                                                                                       CTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGA        <  3:292523/149‑1                                                                                                                                                       CTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGA        <  5:356420/149‑1                                                                                                                                                       CTCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATC          >  1:87043/1‑147                                                                                                                                                        TCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCGTCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAG       >  4:33878/1‑149                                                                                                                                                        TCGGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGATGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAG       >  2:110304/1‑149                                                                                                                                                          GGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGCC     >  3:321223/1‑149                                                                                                                                                          GGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGC      <  2:211085/148‑1                                                                                                                                                          GGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGC      <  6:49253/148‑1                                                                                                                                                          GGCGAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGATGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGCC     <  1:110304/149‑1                                                                                                                                                             GAGGTCGTGGGGCACGAAGGCCGCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGTCGAAATCGAGCCGCG  <  8:288414/149‑1                                                                                                                                                                                                                                                                                                                   GCCGAACAGCGCAGTGAACTGGACCAGCGCTTGTGGCGCTTCAAGGGCGAGGCCTTCGTGCCCCACGACCTCGCCGAGGTGCATGCCGATGCTGACGTGGTTCTGGGCCTGGCTGACAACGCCGGCGAGCACCACGGTCTGCTGATCAACCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1118591‑1118435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctcggcgAGGTCGTGGGGCACGAAGGCCTCGCCCTTGAAGCGCCACAAGCGCTGGTCCAGTTCACTGCGCTGTTCGGCATCCTGGCAGTGCAGATAGACCCGGTGGCCGAGGCGCCAAGCTTTCTCGCACAGTTTGCAGGCGAAATCGAGCCGCG  >  NC_002947/1118521‑1118668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.