| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1755406 | 52 (0.840) | 4 (0.070) | 3/254 | NT | 7.6% | intergenic (+121/‑79) | PP_1558/PP_1559 | hypothetical protein/holin |
| ? | NC_002947 | = 1755446 | 48 (0.810) | intergenic (+161/‑39) | PP_1558/PP_1559 | hypothetical protein/holin | |||||
CGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1755255‑1755406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggcCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGGGT < NC_002947/1755446‑1755300 CGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTC < 4:354229/149‑1CGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTC < 5:17612/149‑1CGCGAGTGATATTCGTCGTGCAGCCGCTTGACCGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTACGTGCGCGACAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTATC < 2:152219/149‑1 TTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTC > 7:31683/1‑144 TTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTC < 8:31683/144‑1 CTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTG > 2:280483/1‑148 TATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAA < 2:191763/149‑1 gCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAA < 3:55284/147‑1 TCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAA < 1:280483/148‑1 GGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCG‑AAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGGGT < 8:43474/149‑1 GCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGGGT < 4:269043/149‑1 GCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGGGT < 4:305450/149‑1 CGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1755255‑1755406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggcCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGGGT < NC_002947/1755446‑1755300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |