New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2130366 =	71 (1.150)	4 (0.070)	4/254	NT	6.0%	coding (1833/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130443 =	58 (0.980)					coding (1756/2496 nt)	fimD	type I pili subunit FimD

TGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130516‑2130366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgtTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCT  >  NC_002947/2130443‑2130589                                                                                                                                                                                                                                                                                                            TGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGC                                                                                                                                                        <  6:50731/148‑1                                                                         CAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTTGGCGTTGTGCTGCAGGTCGAAGCTCGCATTGGCGCGGTGACCGAAAAGCAAGGGTACAGTCCCGCTCAG                                                                               >  6:135710/1‑149                                                                                           TGCCACGCTGAGCGGCATCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTTGGCGTTGTGCTGCAGGTCGAATGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATT                                                             <  5:135710/149‑1                                                                                                       CGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGAC                                                                    >  5:29284/1‑130                                                                                                       CGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGAC                                                                    <  6:29284/130‑1                                                                                                                                                   GCCGTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGAT     >  5:325926/1‑149                                                                                                                                                      GTTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCT  >  4:194116/1‑149                                                                                                                                                                                                                                                                                                            TGGCCTGAGCGTGACGGTACCCTTGCATTTCGGTCACCGCGCCAATGCGACCTTCGACCTGCAGCACAACGCCAACGGCTACAGCCAGCGTGCCACGCTCAGCGGCAGCGACAGCGCGCGCGCGCTGAGCTACAGCACCAGCCTGAGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130516‑2130366 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgtTGGCGTTGTGCTGCAGGTCGAAGGTCGCATTGGCGCGGTGACCGAAATGCAAGGGTACCGTCACGCTCAGGCCAAACTGACGATCATTGCCGTAACGGTCGGTCAACGATTGTGAGGCGAACAGGTTGTAGCCTACACCCCGATGCT  >  NC_002947/2130443‑2130589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.