New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2398546 =	67 (1.080)	5 (0.080)	4/256	NT	7.5%	coding (1111/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	2398578 =	58 (0.970)					coding (1079/3636 nt)	PP_2100	two‑component system sensor protein

CGGGACATTTCCGAGGCATCACCGCCGA‑CCTGCTGGAACTCATTCGCCTGCGCACCGGGTTGCGTTTCGAAGTGCAGCGCGCCAGTGGCATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2398695‑2398546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTCGGAAATGTCCCGAATCATCGAA  >  NC_002947/2398578‑2398705                                                                                                                                                                                                                                                                                         CGGGACATTTCCGAGGCATCACCGCCGA‑CCTGCTGGAACTCATTCGCCTGCGCACCGGGTTGCGTTTCGAAGTGCAGCGCGCCAGTGGCATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGC                                                                                                                                    <  5:242328/148‑1  GGGACATTTCCGAGGCATCACCGCCGATCCTGCTGGAACTCATTCGCCTGCGCACCGGGTTGCGTTTCGAAGTGCAGCGCGCCAGTGGCATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGC                                                                                                                                    >  1:215161/1‑148                                                                                          CATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGC                                                                                                                                    >  7:269070/1‑60                                                                                          CATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGC                                                                                                                                    <  8:269070/60‑1                                                                                                                    AGGATGGCCGGGCCGATGTCATCGCCGCACTGGCCATCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTCGGAAATG                 >  7:96111/1‑149                                                                                                                      GATGGCCGGGCCGATGTCATCGCCGCACTGGCCATCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTCGGAAATGTC               >  8:29158/1‑149                                                                                                                      GATGGCCGGGCCGATGTCATCGCCGCACTGGCCATCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTC                        >  5:259648/1‑140                                                                                                                      GATGGCCGGGCCGATGTCATCGCCGCACTGGCCATCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTC                        <  6:259648/140‑1                                                                                                                                   ATGTCATCGCCGCACTGGCCATCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTCGGAAATGTCCCGAATCATCGAA  <  7:29158/149‑1                                                                                                                                                                                                                                                                                         CGGGACATTTCCGAGGCATCACCGCCGA‑CCTGCTGGAACTCATTCGCCTGCGCACCGGGTTGCGTTTCGAAGTGCAGCGCGCCAGTGGCATTGCCGACATGGTCGCTCGCCTCAAGGATGGCCGGGCCGATGTCATCGCCGCACTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2398695‑2398546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTCCTTGAGGCGAGCGACCATGTCGGCAATGCCACTGGCGCGCTGCACTTCGAAACGCAACCCGGTGCGCAGGCGAATGAGTTCCAGCAGGTCGGCGGTGATGCCTCGGAAATGTCCCGAATCATCGAA  >  NC_002947/2398578‑2398705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.