New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3217027 =	65 (1.050)	4 (0.070)	3/254	NT	6.7%	coding (2942/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3217062 =	49 (0.830)					coding (2977/3129 nt)	mexD	multidrug RND transporter MexD

TGGCTTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217066‑3217027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAG  >  NC_002947/3217062‑3217205                                                                                                                                                                                          TGGCTTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGG                                                       >  5:4589/1‑131 TGGCTTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGG                                                       <  6:4589/131‑1     TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGC                                   >  3:160333/1‑147     TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGC                                   >  3:166318/1‑147                                     GGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGTCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCAGGTCTGTTATGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCAGGTGCAACAGGCTGTCGAGGAG  >  3:243733/1‑148                                                                                                                                                                                          TGGCTTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217066‑3217027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAG  >  NC_002947/3217062‑3217205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.