New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3249788	78 (1.260)	4 (0.070)	4/250	NT	5.3%	coding (1408/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	= 3249816	70 (1.200)					coding (1436/1704 nt)	ureC	urease subunit alpha

TCACGAAGTGGGCTCGGTGGAGGTCGGCAAGCTGGCCGACCTGGTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3249634‑3249788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccagcGCGCCGAACATCGGCCGATAGTGCACCGGCTGGGGGGTGGGTATGGAGCCGTTGATGTCGCCCATGGGCGCGGTGACGATCATCCCGCCCTTGAGCACCAGGGCCGGCTTGACCGCAAAGAACGCTGGCGACCACAGCAC  <  NC_002947/3249816‑3249677                                                                                                                                                                                                                                                                                                         TCACGAAGTGGGCTCGGTGGAGGTCGGCAAGCTGGCCGACCTGGTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCC                                                                                                                                                    >  1:362051/1‑149                               GCTGGCCGACCTGGTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGCGCGCCGAACATCGGCCGATAGTGC                                                                                                                      >  7:214142/1‑149                                         CTGGTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCCTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGCGCGCCGAACATCGGCCGATAGTGCACCGGCTGGG                                                                                                            <  3:115322/149‑1                                            GTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGCGCGCCGAACATCGGCCGATAGTGCACCGGCTGGGGG                                                                                                          <  2:105550/148‑1                                            GTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGCGCGCCGAACATCGGCCGATAGTGCACCGGCTGGGG                                                                                                           <  8:214142/147‑1                                                                                                                                                    CCCCCAGCGCGCCGAACATCGGCCGATAGTGCACCGGCTGGGGGGTGGGTATGGAGACGTTGATGTCGCCCATGGGCGCGGTGACGATCATCCCGCCCTTGAGCACCAGGGCCGGCTTGACCGCAAAGAACGCTGGCGACCCCAGCAC  >  4:81135/1‑148                                                                                                                                                                                                                                                                                                         TCACGAAGTGGGCTCGGTGGAGGTCGGCAAGCTGGCCGACCTGGTGCTGTGGTCGCCAGCGTTCTTTGCGGTCAAGCCGGCCCTGGTGCTCAAGGGCGGGATGATCGTCACCGCGCCCATGGGCGACATCAACGGCTCCATACCCACCCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3249634‑3249788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccagcGCGCCGAACATCGGCCGATAGTGCACCGGCTGGGGGGTGGGTATGGAGCCGTTGATGTCGCCCATGGGCGCGGTGACGATCATCCCGCCCTTGAGCACCAGGGCCGGCTTGACCGCAAAGAACGCTGGCGACCACAGCAC  <  NC_002947/3249816‑3249677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.