| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3413266 = | 46 (0.740) | 8 (0.140) | 6/250 | NT | 15.5% | coding (276/1626 nt) | PP_3026 | recombinase |
| ? | NC_002947 | 3413313 = | 44 (0.760) | coding (323/1626 nt) | PP_3026 | recombinase | |||||
CCAGAAGGCTATAAACCAGGTCCATTGGCTGCGCTTTCAGCCTTTCCCTGTTGTACTCACGGCCGTCACTCGCAGTGACCACGGTAATCCCCGCGTTGATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3413414‑3413266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcagaTCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCATGATCCGGGCTCACGAAGAGAGCGATACCAAAAGCAAGCGT > NC_002947/3413313‑3413458 CCAGAAGGCTATAAACCAGGTCCATTGGCTGCGCTTTCAGCCTTTCCCTGTTGTACTCACGGCCGTCACTCGCAGTGACCACGGTAATCCCCGCGTTGATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGA < 8:245500/149‑1CCAGAAGGCTATAAACCAGGTCCATTGGCTGCGCTTTCAGCCTTTCCCTGTTGTACTCACGGCCGTCACTCGCAGAGACCACGGTAATCCCCGCGTTGATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGA > 7:88522/1‑149 TTGATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGC > 5:305408/1‑149 GATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCT > 3:283931/1‑149 CTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAA > 3:180340/1‑106 CTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAA > 3:87391/1‑106 CTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAA < 4:180340/106‑1 CTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAA < 4:87391/106‑1 AGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTG < 4:283931/144‑1 CTTGCGCCTGTATGGGTTCCGCCCGGCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCATCATCCGGGCTC < 6:305408/149‑1 GCTCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCATGATCCGGGCTCACGAAGAGAGCGATACCAAAAGCAA < 3:303997/149‑1 TCAGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCATGATCCGGGCTCACGAAGAGAGCGATACCAAAAGCAAGC < 3:147847/149‑1 AGATCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCTTGATCCGGGCTCACGAAGAGAGCGATACCAAAAGCAAGCGT > 2:290593/1‑149 CCAGAAGGCTATAAACCAGGTCCATTGGCTGCGCTTTCAGCCTTTCCCTGTTGTACTCACGGCCGTCACTCGCAGTGACCACGGTAATCCCCGCGTTGATGATCTGAGCCAGCTGCGCTTGCGCCTGTATGGGTTCCGCCCGGCTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3413414‑3413266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcagaTCATCAACGCGGGGATTACCGTGGTCACTGCGAGTGACGGCCGTGAGTACAACAGGGAAAGGCTGAAAGCGCAGCCAATGGACCTGGTTTATAGCCTTCTGGTCATGATCCGGGCTCACGAAGAGAGCGATACCAAAAGCAAGCGT > NC_002947/3413313‑3413458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |