New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3709479	48 (0.770)	3 (0.050)	3/256	NT	5.7%	coding (918/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit
	?	NC_002947	= 3709501	53 (0.890)					coding (896/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit

TCAAAGTCCAGCACCACCTTGTCACTCACCGGGTAGGTCTGGCACGACAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3709330‑3709479 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCCAGACCTACCCGGTGA  <  NC_002947/3709501‑3709355                                                                                                                                                                                                                                                                                                           TCAAAGTCCAGCACCACCTTGTCACTCACCGGGTAGGTCTGGCACGACAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTACGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCC                                                                                                                                                      >  7:114896/1‑149                                  TAGGTCTGGCACGACAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGC                                                                                                                     <  2:378609/149‑1                                                   CACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTC                                                                                                                   >  3:260427/1‑134                                                   CACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTC                                                                                                                   <  4:260427/134‑1                                                                                                                                                  CGCCGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCCAGACCTACCCGG     >  1:645/1‑149                                                                                                                                                     CGAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCCAGACCTACCCGGTGA  <  3:132940/149‑1                                                                                                                                                                                                                                                                                                           TCAAAGTCCAGCACCACCTTGTCACTCACCGGGTAGGTCTGGCACGACAGCACATACCCGGCCGCCACTTCGTAGTCTTCGAGGGCATGGTTGCTGTCCATCTCCACTTCGCCCTCGATCACTCGGCACTTGCAGGTGGAGCACACGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3709330‑3709479 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgAGCTGCCCTACTCGTGCAAGGCCGGCGTGTGCTCCACCTGCAAGTGCCGAGTGATCGAGGGCGAAGTGGAGATGGACAGCAACCATGCCCTCGAAGACTACGAAGTGGCGGCCGGGTATGTGCTGTCGTGCCAGACCTACCCGGTGA  <  NC_002947/3709501‑3709355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.