New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3771607	68 (1.100)	4 (0.070)	4/252	NT	5.7%	coding (1020/1494 nt)	PP_3331	membrane protein
	?	NC_002947	= 3771654	67 (1.140)					coding (1067/1494 nt)	PP_3331	membrane protein

CCCACAGGCGCTACGTCAGGGGCCGCTACGCGCGATGGATATCGGCCAGACGGTTGCCCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3771457‑3771607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAGGCTCCCGGCCCAGGCTGGCCATGGCCTGGGCAAC  <  NC_002947/3771654‑3771509                                                                                                                                                                                                                                                                                                                    CCCACAGGCGCTACGTCAGGGGCCGCTACGCGCGATGGATATCGGCCAGACGGTTGCCCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCC                                                                                                                                                      <  1:22482/149‑1                                            GGCCAGACGGTTGCCCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGG                                                                                                            <  8:24453/148‑1                                                          CCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGG                                                                                                <  7:62062/146‑1                                                          CCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGG                                                                                                >  8:62062/1‑146                                                               CCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGTTGCCCACAATGCCCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGG                                                                                                 <  1:367406/149‑1                                                                                                                                                            CCCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAGGCTCCCGGCCCAGGCTGGCCATGGCCTGGGC     <  2:128770/148‑1                                                                                                                                                             CCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTTAACCCAG                                    <  1:56645/116‑1                                                                                                                                                             CCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAG                                    <  1:62192/116‑1                                                                                                                                                             CCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAG                                    >  2:56645/1‑116                                                                                                                                                             CCGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAG                                    >  2:62192/1‑116                                                                                                                                                              CGCGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAGGCTCCCGGCCCAGGCTGGCCATGGCCTGGGCAAC  >  2:390106/1‑149                                                                                                                                                                                                                                                                                                                    CCCACAGGCGCTACGTCAGGGGCCGCTACGCGCGATGGATATCGGCCAGACGGTTGCCCAGGCCATGGCCAGCCTGGGCCGGGAGCCTGGGTTCAACCCTGTCGAAATCCAGTGGCAACGCCTGGGCGGCGACACCTTCCTGGT‑‑‑‑‑‑‑‑‑TGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3771457‑3771607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcGCCGGCGGCGCGCCGGCTTCCAGAATCCGGCTATCGCCGGCGGCATTGCGGGCAACCAGGAAGGTGTCGCCGCCCAGGCGTTGCCACTGGATTTCGACAGGGTTGAACCCAGGCTCCCGGCCCAGGCTGGCCATGGCCTGGGCAAC  <  NC_002947/3771654‑3771509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.