New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3857244 =	77 (1.240)	4 (0.070)	3/250	NT	5.7%	coding (298/480 nt)	PP_3406	acetyltransferase
	?	NC_002947	3857288 =	61 (1.050)					coding (342/480 nt)	PP_3406	acetyltransferase

CGCCATCCAGCCGGTAGCGCACCCACTCATCCTGCGCCTCGGCCCCCAGTTTCTGGTAGAAGCCGATCGCTGGCTCGTTCCAGTCCAGCACACTCCATTCCAGGCGCCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3857397‑3857244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaactgTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCGCCCG  >  NC_002947/3857288‑3857433                                                                                                                                                                                                                                                                                                              CGCCATCCAGCCGGTAGCGCACCCACTCATCCTGCGCCTCGGCCCCCAGTTTCTGGTGGAAGCCGATCGCTGGCTCGTTCCAGTCCAGCACACTCCATTCCAGGCGCCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAA                                                                                                                                                          >  3:350435/1‑148    CATCCAGCCGGTAGCGCACCCACTCATCCTGCGCCTCGGCCCCCAGTTTCTGGTAGAAGCCGATCGCTGGCTCGTTCCAGTCCAGCACACTCCATTCCAGGCGCCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAAC                                                                                                                                                      <  2:217527/149‑1                                                                                                           CCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCA                                                                                                            <  5:168465/88‑1                                                                                                           CCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCA                                                                                                            >  6:168465/1‑88                                                                                                              ACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTGTGGGCGCCTGGAATGGAGTGTGCTGGGCTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTG                                             >  7:60959/1‑148                                                                                                              ACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTCCCAGCACCTGGGGGCCGCGGCGCAGGATGAGTGGGTGCGCTCCCGGCTGG                                            >  8:251305/1‑149                                                                                                                                                    ACAACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGACAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCG      >  4:191889/1‑149                                                                                                                                                      AACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCGCC    >  7:300882/1‑149                                                                                                                                                       ACTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCGCCC   <  8:289561/149‑1                                                                                                                                                        CTGTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCGCCCG  <  2:311139/149‑1                                                                                                                                                                                                                                                                                                              CGCCATCCAGCCGGTAGCGCACCCACTCATCCTGCGCCTCGGCCCCCAGTTTCTGGTAGAAGCCGATCGCTGGCTCGTTCCAGTCCAGCACACTCCATTCCAGGCGCCCACAGTTGTTCGCCACCGCTTCGCGGGCAATGTGCTGCAACAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3857397‑3857244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaactgTGGGCGCCTGGAATGGAGTGTGCTGGACTGGAACGAGCCAGCGATCGGCTTCTACCAGAAACTGGGGGCCGAGGCGCAGGATGAGTGGGTGCGCTACCGGCTGGATGGCGACAAGCTGGCGGCATTCGCCCGCGGGTGATCGCCCG  >  NC_002947/3857288‑3857433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.