New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3898997	68 (1.100)	4 (0.070)	4/256	NT	5.5%	coding (142/1155 nt)	PP_3441	hypothetical protein
	?	NC_002947	= 3899042	72 (1.210)					coding (97/1155 nt)	PP_3441	hypothetical protein

ACTTGCACTGTCCACGATCGAGGCGCTGCCCTGGCCCTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3898881‑3898997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtt‑gGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAGGAGAGCCCGTACGAAATCCTCTACATCGGCCGCAAGCAGCAACGGGAAATGGCCAAGCTGCTGATCGGTGGCAAGGGCCAGGGCAGCGCCTCGAT  <  NC_002947/3899042‑3898897                                                                                                                                                                                                                                                                          ACTTGCACTGTCCACGATCGAGGCGCTGCCCTGGCCCTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTT‑GGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGC                                                                                                                    >  2:96459/1‑149                     AGGCGCTGCCCTGGCCCTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTTCGGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAG                                                                                                 <  1:96459/149‑1                                     CTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTT‑GGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAGGAGA                                                                                             >  7:262548/1‑136                                     CTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTT‑GGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAGGAGA                                                                                             <  8:262548/136‑1                                                                                                                   TT‑GGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAGGAGAGCCCGTACGAAATCCTCTACATCGGCCGCAAGCAGCAACGGGAAATGGCCAAGCTGCTGATCGGTGGCAAGGGCCAGGGCAGCGCCTCGAT  >  2:190649/1‑149                                                                                                                                                                                                                                                                          ACTTGCACTGTCCACGATCGAGGCGCTGCCCTGGCCCTTGCCACCGATCAGCAGCTTGGCCATTTCCCGTTGCTGCTTGCGGCCGATGTAGAGGATTTCGTACGGGCTCTCCTGTT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3898881‑3898997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtt‑gGCGCGTGCCTGTCTCTGGCGTTGGGAAGTCGCCAGGTTCCGCCCGCAACAGGAGAGCCCGTACGAAATCCTCTACATCGGCCGCAAGCAGCAACGGGAAATGGCCAAGCTGCTGATCGGTGGCAAGGGCCAGGGCAGCGCCTCGAT  <  NC_002947/3899042‑3898897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.