New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4168945 =	65 (1.050)	4 (0.070)	4/256	NT	5.8%	coding (948/2256 nt)	katG	catalase‑peroxidase
	?	NC_002947	4169019 =	68 (1.140)					coding (874/2256 nt)	katG	catalase‑peroxidase

CCTTTGGCCGCATGGCCATGAACGATGAAGAAACCGTGGCCTTGATCGCCGGTGGCCACGCGTTCGGCAAGACCCATGGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4169096‑4168945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATA  >  NC_002947/4169019‑4169163                                                                                                                                                                                                                                                                                                           CCTTTGGCCGCATGGCCATGAACGATGAAGAAACCGTGGCCTTGATCGCCGGTGGCCACGCGTTCGGCAAGACCCATGGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGG                                                                                                                                                      <  3:299450/149‑1  CTTTGGCCGCATGGCCATGAACGATGAAGAAACCGTGGCCTTGATCGCCGGTGGCCACGCGTTCGGCAAGACCCATGGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGG                                                                                                                                                      >  7:196811/1‑148                                                                          CCATGGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGGCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCCTGCG                                                                             >  1:389982/1‑149                                                                              GGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGGCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCTACGGTTTCTTCATCGTTCATGGC                                                                                   >  3:137665/1‑139                                                                              GGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGGCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCTACGGTTTCTTCATCGTTCATGGC                                                                                   <  4:137665/139‑1                                                                                                                          AGGCCTGGAGATGCAGGGCCTGGGCTGGCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTT                             <  2:389982/149‑1                                                                                                                                                    GGCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACA    >  8:140368/1‑148                                                                                                                                                     GCACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTGTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATA  <  7:140368/149‑1                                                                                                                                                       ACCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGACCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACA    >  4:123437/1‑145                                                                                                                                                                                                                                                                                                           CCTTTGGCCGCATGGCCATGAACGATGAAGAAACCGTGGCCTTGATCGCCGGTGGCCACGCGTTCGGCAAGACCCATGGTGCCGGCCCCGCCGACAACGTCGGCCCCGAGCCGGAAGCGGCAGGCCTGGAGATGCAGGGCCTGGGCTGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4169096‑4168945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacCATGGGTCTTGCCGAACGCGTGGCCACCGGCGATCAAGGCCACGGTTTCTTCATCGTTCATGGCCATGCGGCCAAAGGTTTCACGGATGTCCTTGCCCGAGGCCACGGGGTCGGGGTTACCTTCCGGGCCTTCCGGGTTCACATA  >  NC_002947/4169019‑4169163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.