New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359391 =	57 (0.920)	4 (0.070)	3/260	NT	7.3%	coding (565/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359478 =	46 (0.760)					coding (478/1446 nt)	PP_3834	hypothetical protein

GACACCAAGAAGTTCGTCTCTGAGCTGCAGGGGCATGCTGCCTTCGCCGGTTGCACCGTACTGTTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGGGTGAGCAACTGGTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4359541‑4359391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTG  >  NC_002947/4359478‑4359622                                                                                                                                                                                                                                                                                                          GACACCAAGAAGTTCGTCTCTGAGCTGCAGGGGCATGCTGCCTTCGCCGGTTGCACAGTACTGTTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGCGTGAGCAACTGGTCGG                                                                                                                                                     >  3:33066/1‑149                                                             CTGTTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGGGTGAGCAACTGGTCGGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTT                                                                                         >  7:310365/1‑149                                                             CTGTTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGACATCGAACTGGGTGAGCAACTGGTCGGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTT                                                                                         >  1:306603/1‑149                                                                TTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGGGTGAGCAACTGGTCGGCAACAGTACGGTGCAACCGGCGAATGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTGGT                                                                                      >  7:350858/1‑149                                                                TTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGGGTGAGCAACTGGTCGGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG                                                                                        <  2:306603/147‑1                                                                                                                                                    GGCAACAGTACGGTGCAACCGGCGAATGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTG  <  8:350858/149‑1                                                                                                                                                    GGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTG  <  8:310365/149‑1                                                                                                                                                                                                                                                                                                          GACACCAAGAAGTTCGTCTCTGAGCTGCAGGGGCATGCTGCCTTCGCCGGTTGCACCGTACTGTTGCTGACCAGTGCCCGGCTCGACGAGGGCAGCCCGGAACACACCATGGTCGATGGCGTGATCGAACTGGGTGAGCAACTGGTCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4359541‑4359391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTGGTGTCCAGCGCGGTTTCCGCACGTACCCGGGCATTGAGCACACCGTCGACGATCAGCAGGCTGGCCTGTTGCCGGGCAATTTCCTG  >  NC_002947/4359478‑4359622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.