New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4545872 | 63 (1.020) | 4 (0.070) | 4/250 | NT | 6.1% | coding (1474/1491 nt) | pydP | NCS1 family transporter PydP |
? | NC_002947 | = 4545894 | 64 (1.100) | coding (1452/1491 nt) | pydP | NCS1 family transporter PydP |
AGCCGGGCCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4545717‑4545872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttggcGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCACCCGCC < NC_002947/4545894‑4545748 AGCCGGGCCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGG < 4:143931/149‑1 GGGCCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTT > 1:161121/1‑149 GCCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGG > 4:158743/1‑149 CCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCCCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGC > 7:191093/1‑149 GTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAAC < 5:378531/144‑1 GTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAAC > 6:378531/1‑144 TCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGC < 2:161121/149‑1 GTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGG < 7:68220/102‑1 GTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGG > 8:68220/1‑102 ACGGGCGTTGGTCTTCAGGAGCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGC < 1:193713/149‑1 GGTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCA > 4:346031/1‑149 GTTTGGCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCAC < 3:230208/149‑1 GCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCACCCGCC > 3:212111/1‑149 GCGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCACCCGCC > 7:22669/1‑149 AGCCGGGCCAGGTCCATCAGCGACTGCCACAGGCGGGTGCTGTCGACGTGACGGGCGTTGGTCTTCAGGATCTCTTTGACGGGGGTCACGGGCTTCTCCTTCAGGCTTCTTATTGTTTGTACGGGCCTCTTCGAGGCCTCAAGGCAAGGGTTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4545717‑4545872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttggcGGCACGCAACCCGGTGCGGTTGGCCAAACCCTTGCCTTGAGGCCTCGAAGAGGCCCGTACAAACAATAAGAAGCCTGAAGGAGAAGCCCGTGACCCCCGTCAAAGAGATCCTGAAGACCAACGCCCGTCACGTCGACAGCACCCGCC < NC_002947/4545894‑4545748 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |