New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4571661	69 (1.110)	5 (0.080)	5/254	NT	6.6%	coding (1525/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4571690	75 (1.270)					coding (1554/2775 nt)	treY	maltooligosyl trehalose synthase

GCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4571508‑4571661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAG  <  NC_002947/4571690‑4571543                                                                                                                                                                                                                                                                                                                GCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGG                                                                                                                                                           >  5:131637/1‑149  CGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGC                                                                                                                                                          >  8:59829/1‑149   GCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCG                                                                                                                                                         >  6:384081/1‑149   GCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCG                                                                                                                                                         >  8:14452/1‑149    CATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGG                                                                                                                                                        <  5:384081/149‑1          CCGGTNTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCGCGC                                                                                                                                                  >  7:361518/1‑149                         TACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAG‑CCCGGTGGCAGATGCC                                                                                                                                  >  5:82690/1‑149                                   CCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAG‑CCCGGTGGCAGATGCCGCCAGGCTT                                                                                                                         <  6:82690/148‑1                                           CGCCCGGCGCAGGACGAAACGGTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCC                                                                                                                 <  8:361518/149‑1                                                                      CAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGTCGCGCCCCGGTGGCAGATGCCGCCAG                                                                                                                             <  5:203573/110‑1                                                                      CAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCGCGCCCCGGTGGCAGATGCCGCCAG                                                                                                                             >  6:203573/1‑110                                                                                                                                                     GCGGGCGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGC        <  1:169459/148‑1                                                                                                                                                      CGGGCGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCC      <  1:7616/149‑1                                                                                                                                                         GCGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCG     >  2:379241/1‑147                                                                                                                                                         GCGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCGTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCA   <  6:312940/149‑1                                                                                                                                                          CGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAG  <  2:40138/149‑1                                                                                                                                                                                                                                                                                                                GCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4571508‑4571661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcGCGCCCCGGTGGCAGATGCCGCCAGGCTTGCCCGCCCAGCCACCGTTCAAGTTGGTCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAG  <  NC_002947/4571690‑4571543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.