New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4575236 =	57 (0.920)	4 (0.070)	4/246	NT	7.2%	coding (1908/2154 nt)	glgX	glycogen debranching enzyme
	?	NC_002947	4575270 =	50 (0.870)					coding (1942/2154 nt)	glgX	glycogen debranching enzyme

TCCGGCCGGTCGGTATCGACCAGGCAGCTCCAGTAATCGCCTTCGGGCACGGCCGGTAGCTTGAATGGCACGATGTCATGGTGGGCATTGACGATCAGCAACACGGTGGCCTCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4575388‑4575236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccggccaGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAAT  >  NC_002947/4575270‑4575414                                                                                                                                                                                                                                                                                                            TCCGGCCGGTCGGTATCGACCAGGCAGCTCCAGTAATCGCCTTCGGGCACGGCCGGTAGCTTGAATGGCACGATGTCATGGTGGGCATTGACGATCAGCAACACGGTGGCCTCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCG                                                                                                                                                       >  2:74715/1‑149    gcctGGTCGATACCGACCAGGCAGCTCCAGTAATCGCCTTCGGGCACGGCCGGTAGCTTGAATGGCACGATGTCATGGTGGGCATTGACGATCAGCAACACGGTGGCCTCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCGGC                                                                                                                                                     >  6:132306/5‑148     cctGGTCGATACCGACCAGGCAGCTCCAGTAATCGCCTTCGGGCACGGCCGGTAGCTTGAATGGCACGATGTCATGGTGGGCATTGACGATCAGCAACACGGTGGCCTCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCGGCCA                                                                                                                                                   >  5:87687/4‑149                                                                                                                TCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCGGCCCGGTGCCGAGGCCACCGGGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATAC                                        >  1:388711/1‑149                                                                                                                        TGGCCGGGCGATACCGCTGACCTGCGCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGG                                                                                <  7:253564/101‑1                                                                                                                        TGGCCGGGCGATACCGCTGACCTGCGCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGG                                                                                >  8:253564/1‑101                                                                                                                          GCCGGGCGATACCGCTGACCTGCGCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCG                              >  3:358033/1‑149                                                                                                                                             tagaGCCCGGCCAGGTTCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGC           <  4:32431/145‑1                                                                                                                                                 GCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCT       >  4:122956/1‑149                                                                                                                                                 GCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCT       <  4:51205/149‑1                                                                                                                                                 GCCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCT       >  6:320100/1‑149                                                                                                                                                  CCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTG      <  6:351703/149‑1                                                                                                                                                  CCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTG      >  8:340121/1‑149                                                                                                                                                  CCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGAC                                    >  5:320251/1‑119                                                                                                                                                  CCCGGCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGAC                                    <  6:320251/119‑1                                                                                                                                                      GCCAGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAAT  >  8:110568/1‑149                                                                                                                                                                                                                                                                                                            TCCGGCCGGTCGGTATCGACCAGGCAGCTCCAGTAATCGCCTTCGGGCACGGCCGGTAGCTTGAATGGCACGATGTCATGGTGGGCATTGACGATCAGCAACACGGTGGCCTCGGCACCTGGCCGGGCGATACCGCTGACCTGCGCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4575388‑4575236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccggccaGGTGCCGAGGCCACCGTGTTGCTGATCGTCAATGCCCACCATGACATCGTGCCATTCAAGCTACCGGCCGTGCCCGAAGGCGATTACTGGAGCTGCCTGGTCGATACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAAT  >  NC_002947/4575270‑4575414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.