| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5023850 = | 70 (1.130) | 5 (0.090) | 4/250 | NT | 7.2% | coding (86/855 nt) | PP_4428 | amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5023888 = | 64 (1.100) | coding (48/855 nt) | PP_4428 | amino acid ABC transporter substrate‑binding protein | |||||
TAGAGGGAGATTTTTGATGAACTTGGTCACTTCGCTTTCCGCAGTCGCTCAACGCCTGACCCTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5023951‑5023850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacacgcCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGATAGCG > NC_002947/5023888‑5024032 TAGAGGGAGATTTTTGATGAACTTGGTCACTTCGCTTTCCGCAGTCGCTCAACGCCTGACCCTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGC > 5:94425/1‑96TAGAGGGAGATTTTTGATGAACTTGGTCACTTCGCTTTCCGCAGTCGCTCAACGCCTGACCCTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGC < 6:94425/96‑1 CTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAG > 3:16004/1‑148 CTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAG > 2:8371/1‑145 GCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGAT < 1:8371/147‑1 GCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCG > 3:81682/1‑118 GCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCG < 4:81682/118‑1 GCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAACAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGA < 4:341251/148‑1 GCACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGA < 6:114043/148‑1 GCACACGCCAGGGGCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGA < 4:335767/148‑1 CACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGATA < 5:197756/149‑1 ACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGGCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCC < 6:126272/129‑1 ACACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCC > 5:126272/1‑129 ACGCCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGATAGCG > 3:179909/1‑149 TAGAGGGAGATTTTTGATGAACTTGGTCACTTCGCTTTCCGCAGTCGCTCAACGCCTGACCCTGGCGTGTGCCATTGCGAGCATCGCCGTATCCGCACACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5023951‑5023850‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacacgcCAGGGTCAGGCGTTGAGCGACTGCGGAAAGCGAAGTGACCAAGTTCATCAAAAATCTCCCTCTATTGTAATTGGCCCGCGTGGCGCGGAGTTTTGGGCAGATAGAAGATCACGCTGCAGCGCCGCTATTTTTGGAATTGATAGCG > NC_002947/5023888‑5024032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |