New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5129142 =	64 (1.030)	7 (0.120)	6/250	NT	10.4%	intergenic (‑38/+114)	PP_4515/recQ	MarR family transcriptional regulator/ATP‑dependent DNA 3'‑5' helicase
	?	NC_002947	5129184 =	60 (1.030)					intergenic (‑80/+72)	PP_4515/recQ	MarR family transcriptional regulator/ATP‑dependent DNA 3'‑5' helicase

TTGCGTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5129295‑5129142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggttaCGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGCAATAGAGTACGCCCTCCGGCACCCGCGCCCCGAACTG  >  NC_002947/5129184‑5129330                                                                                                                                                                                                                                                                                                               TTGCGTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCA                                                                                                                                                           <  7:59314/148‑1   GCGTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATG                                                                                                                                                         <  1:265183/148‑1   GCGTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATG                                                                                                                                                         <  4:370302/148‑1     GTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTT                                                                                                                                                      <  5:212617/149‑1     GTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCACGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGT                                                                                                                                                       >  1:276890/1‑148                                                                                                                GTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTA                                                                          <  1:238612/118‑1                                                                                                                GTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTA                                                                          >  2:238612/1‑118                                                                                                                GTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTT                                                                                            >  1:279071/1‑100                                                                                                                GTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTT                                                                                            <  2:279071/100‑1                                                                                                                    CCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACG                                        >  2:307329/1‑148                                                                                                                     CATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGC                                       >  8:73774/1‑148                                                                                                                               CCTTGCCTCGTAGGGCAGGGCATGGTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGCAATAGAGTACG                            <  7:73774/149‑1                                                                                                                                                       GTTACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGGCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGCAATAGAGTACGCCCTCCGGCACCCGCGCCCCGAA     <  1:89925/148‑1                                                                                                                                                         TACGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGAAGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGCAATAGAGTACGCCCTCCGGCACCCGCGCCCCGAACTG  >  1:81298/1‑149                                                                                                                                                                                                                                                                                                               TTGCGTGCGCGCAGCACTGGCGGCGGAATTCGAATTGTAAACGCATGCAGGATCGAAGGCAGAAGCGCCATCTGCTGACCTTTGTCATGCTTTTTGACGATTATCGAACGCGTAACCATGGCCGAGCCTTGCCTCGTAGGGCAGGGCATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5129295‑5129142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggttaCGCGTTCGATAATCGTCAAAAAGCATGACAAAGGTCAGCAGATGGCGCTTCTGCCTTCGATCCTGCATGCGTTTACAATTCGAATTCCGCCGCCAGTGCTGCGCGCACGCAATAGAGTACGCCCTCCGGCACCCGCGCCCCGAACTG  >  NC_002947/5129184‑5129330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.