New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5270174	56 (0.900)	4 (0.070)	4/252	NT	6.6%	coding (165/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	= 5270204	60 (1.020)					coding (135/1371 nt)	radA	DNA repair enzyme

GCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5270027‑5270174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgcACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTG  <  NC_002947/5270204‑5270057                                                                                                                                                                                                                                                                                                          GCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTG                                                                                                                                                       <  4:200145/147‑1                                                         CCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAG                                                                                                                 <  3:235215/129‑1                                                         CCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAG                                                                                                                 >  4:235215/1‑129                                                                                          TGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCACCTGCTGCACCCAGCAGCGGTCGCGCTG                                                                                                                                  >  7:151625/1‑79                                                                                          TGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCACCTGCTGCACCCAGCAGCGGTCGCGCTG                                                                                                                                  <  8:151625/79‑1                                                                                                                                                 CTGCACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCG     <  7:107557/149‑1                                                                                                                                                   GCACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGT   >  5:67257/1‑149                                                                                                                                                    CACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCTGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTG  <  7:44606/149‑1                                                                                                                                                    CACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACGGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTG  >  5:378425/1‑149                                                                                                                                                                                                                                                                                                          GCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5270027‑5270174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgcACCCAGCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTG  <  NC_002947/5270204‑5270057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.