New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5302179 =	65 (1.050)	4 (0.070)	3/254	NT	6.6%	coding (1594/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease
	?	NC_002947	5302216 =	52 (0.880)					coding (1557/3675 nt)	recB	Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease

GGGTGCATTCCTGTTCCGCGAGGCCGATGACAACCCGCTGCCATTCATCGAGGTGCGCGCCAAGGGGCGTGGCGAACAGCTGCTGATTGACGGTGAAGTCAGTGCAGCCCTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5302330‑5302179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaTTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTGCAGG  >  NC_002947/5302216‑5302360                                                                                                                                                                                                                                                                                                           GGGTGCATTCCTGTTCCGCGAGGCCGATGACAACCCGCTGCCATTCATCGAGGTGCGCGCCAAGGGGCGTGGCGAACAGCTGCTGATTGACGGTGAAGTCAGTGCAGCCCTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTC                                                                                                                                                        >  5:59559/1‑147    TGCATTCCTGTTCCGCGAGGCCGATGACAACCCGCTGCCATTCATCGAGGTGCGCGCCAAGGGGCGTGGCGAACAGCTGCTGATTGACGGTGAAGTCAGTGCAGCCCTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCA                                                                                                                                                   <  4:267188/149‑1                                                                                                              CTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAG                                          >  2:305554/1‑148                                                                                                              CTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGC                                                                                          <  5:161456/100‑1                                                                                                              CTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGC                                                                                          >  6:161456/1‑100                                                                                                                 CAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAAT                                      <  1:305554/149‑1                                                                                                                                                   CCAGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTG      >  3:144244/1‑147                                                                                                                                                     AGCATTGCAGGGCTGCACTGCCTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTGCAG   >  1:254820/1‑148                                                                                                                                                     AGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTGCAGG  <  2:83503/149‑1                                                                                                                                                     AGCATTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTGCAG   >  4:243621/1‑148                                                                                                                                                                                                                                                                                                           GGGTGCATTCCTGTTCCGCGAGGCCGATGACAACCCGCTGCCATTCATCGAGGTGCGCGCCAAGGGGCGTGGCGAACAGCTGCTGATTGACGGTGAAGTCAGTGCAGCCCTGCAATGCTGGCAGCTGGAAAGTGAAGAGCCAGTCTCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5302330‑5302179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaTTGCAGGGCTGCACTGACTTCACCGTCAATCAGCAGCTGTTCGCCACGCCCCTTGGCGCGCACCTCGATGAATGGCAGCGGGTTGTCATCGGCCTCGCGGAACAGGAATGCACCCCGCCCCGCTTCACGCGCCTCGGCCTGCAGG  >  NC_002947/5302216‑5302360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.