New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5567392 =	68 (1.100)	6 (0.100)	6/254	NT	8.5%	coding (94/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	5567446 =	64 (1.080)					coding (40/1899 nt)	mutL	DNA mismatch repair protein MutL

GCTGAAGGTTGGCCAGCGCCTCGATGTACCCGCCACAACCTTGGCCGCGCAATGATGAGTGGCGGTTCGCGAATTCAGCTGCTCAGCCCGCGGCTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5567539‑5567392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCTGGTAA  >  NC_002947/5567446‑5567593                                                                                                                                                                                                                                                                                                          GCTGAAGGTTGGCCAGCGCCTCGATGTACCCGCCACAACCTTGGCCGCGCAATGATGAGTGGCGGTTCGCGAATTCAGCTGCTCAGCCCGCGGCTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCC                                                                                                                                                       >  5:47660/1‑147                                                                                             GCTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAG                                                         >  6:253353/1‑149                                                                                              CTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGC                                                        >  2:299529/1‑149                                                                                                GGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACAT                                                                               >  5:382269/1‑124                                                                                                GGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACAT                                                                               <  6:382269/124‑1                                                                                                                 CCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGT                                     >  3:103338/1‑149                                                                                                                                        GCGTCTGTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACA              <  4:103338/149‑1                                                                                                                                                GGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCT       <  7:217056/148‑1                                                                                                                                                 GCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCTG      <  5:253353/148‑1                                                                                                                                                  CCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCTGG     >  6:143319/1‑148                                                                                                                                                    AGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCTGGTAA  <  1:299529/149‑1                                                                                                                                                                                                                                                                                                          GCTGAAGGTTGGCCAGCGCCTCGATGTACCCGCCACAACCTTGGCCGCGCAATGATGAGTGGCGGTTCGCGAATTCAGCTGCTCAGCCCGCGGCTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5567539‑5567392 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACCTGGTAA  >  NC_002947/5567446‑5567593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.