New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5693880 =	54 (0.870)	4 (0.070)	4/258	NT	7.3%	coding (136/519 nt)	pyrR	pyrimidine operon regulatory protein/uracil phosphoribosyltransferase
	?	NC_002947	5693919 =	49 (0.820)					coding (175/519 nt)	pyrR	pyrimidine operon regulatory protein/uracil phosphoribosyltransferase

CGTCATCCACCAGCACCAGGTGCTGGCCTTCGACCTCGAACGGCAACTCGGACGGGCGCACTTGTGGGTGCAGGCCGTTCTGGCTGAAGTCGTCGCGGTAGAACGACACGTCCAGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5694030‑5693880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGTCGAAGGCCAGCACCTGGTGCTGGTGGATGACGTGCTGATGAGCGGTCGCACCATCCGCGCGGCGC  >  NC_002947/5693919‑5694063                                                                                                                                                                                                                                                                                                          CGTCATCCACCAGCACCAGGTGCTGGCCTTCGACCTCGAACGGCAACTCGGACGGGCGCACTTGTGGGTGCAGGCCGTTCTGGCTGAAGTCGTCGCGGTAGAACGACACGTCCAGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCC                                                                                                                                                     >  8:86348/1‑149                                                                                                                 CAGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTGGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGT                                                                   >  5:169238/1‑119                                                                                                                 CAGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTGGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGT                                                                   <  6:169238/119‑1                                                                                                                  AGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTGGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGTCGAAGGCCAGCACCTGGTGCTGGT                                           <  7:330221/142‑1                                                                                                                  AGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTGGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGTCGAAGGCCAGCACCTGGTGCTGGT                                           >  8:330221/1‑142                                                                                                                                                    CCTGGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGTCGAAGGCCAGCACCTGGTGCTGGTGGATGACGTGCTGATGAGCGGTCGCACCATCCGCGCGGCGC  >  3:182791/1‑149                                                                                                                                                                                                                                                                                                          CGTCATCCACCAGCACCAGGTGCTGGCCTTCGACCTCGAACGGCAACTCGGACGGGCGCACTTGTGGGTGCAGGCCGTTCTGGCTGAAGTCGTCGCGGTAGAACGACACGTCCAGGGTGCCCATTGGGCTGGTGTCGCCCATGGCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5694030‑5693880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGACGTGTCGTTCTACCGCGACGACTTCAGCCAGAACGGCCTGCACCCACAAGTGCGCCCGTCCGAGTTGCCGTTCGAGGTCGAAGGCCAGCACCTGGTGCTGGTGGATGACGTGCTGATGAGCGGTCGCACCATCCGCGCGGCGC  >  NC_002947/5693919‑5694063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.