New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5751672 =	59 (0.950)	3 (0.050)	3/250	NT	5.6%	intergenic (‑110/‑361)	thiI/glnA	tRNA sulfurtransferase/glutamine synthetase
	?	NC_002947	5751782 =	45 (0.770)					intergenic (‑220/‑251)	thiI/glnA	tRNA sulfurtransferase/glutamine synthetase

GTAAACCCGCTCCTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5751756‑5751672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctggcACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATGCAATT  >  NC_002947/5751782‑5751929                                                                                                                                                                                                                                           GTAAACCCGCTCCTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAACCTGGCAGACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTCTGGGTGCcc                                                                                      >  8:360798/1‑147     ACCCGCTCCTACGGGCTTTGCAACGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTC                                                                                  >  7:59538/1‑149             CTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAACCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTA                                                                          <  8:59538/149‑1                                                                                CCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATG       >  2:125420/1‑149                                                                                CCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGG                  >  5:353670/1‑138                                                                                CCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGG                  >  5:359318/1‑138                                                                                CCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGG                  <  6:353670/138‑1                                                                                CCTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGG                  <  6:359318/138‑1                                                                                 CTGGCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACACGCTAACCCAACGCCAAAAGAACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGCCACTGGCATG       >  7:309169/1‑148                                                                                 CTGGCACACCACTCACGCCACGCACCCTATTGCTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCAAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCAGTGGCAag       >  5:289094/1‑146                                                                                    GCACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATGCA     <  4:275072/147‑1                                                                                     CACACCACTCACGCCACGCACGCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATGCAATT  <  1:158809/149‑1                                                                                     CACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATGCAATT  <  2:1143/149‑1                                                                                                                                                                                                                                           GTAAACCCGCTCCTACGGGCTTTGCACCGCCTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGCGCTGCAAAACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5751756‑5751672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctggcACACCACTCACGCCACGCACCCTATTGGTGCGACACGATCAAAAAACGCATCGTAAGGGTGCACTTTCACCCGCTAACCCAACGCCAAATGCACGCAAACGCCCCCTTTTATCCCACCCTCGCCATTTTCGGGCACTGGCATGCAATT  >  NC_002947/5751782‑5751929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.