| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5948052 | 75 (1.210) | 3 (0.050) | 3/254 | NT | 3.7% | coding (422/1260 nt) | rho | transcription termination factor Rho |
| ? | NC_002947 | = 5948073 | 84 (1.420) | coding (401/1260 nt) | rho | transcription termination factor Rho | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAATGTTCTGCAGCATGATCGTCTTACCGGCTTTCGGCGGGGCAACGATCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5947899‑5948052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttcgAAAACCTGACGCCGCTGTTCCCGAACAAGCGCCTGAAGATGGAGGCCGGTAACGGCTCCACCGAGGACTTGACCGGTCGCGTCATCGACCTGTGCGCCCCGATCGGCAAAGGCCAGCGCGGCCTGATCGTTGCCCCGCCGAAAGCCGG < NC_002947/5948073‑5947926 GCAATGTTCTGCAGCATGATCGTCTTACCGGCTTTCGGCGGGGCAACGATCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTT > 2:331086/1‑149 AATGTTCTGCAGCATGATCGTCTTACCGGCTTTCGGCGGGGCAACGATCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGT > 1:43197/1‑149 GCGGGGCAACGATCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGTTCGAAAACCTGACGCCGCTGTTCCCGAACAAGCGC < 4:359186/149‑1 TCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGTTCGAAAACCTGACGCCGCTGTTCCCGAACAAGC > 5:161764/1‑135 TCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGTTCGAAAACCTGACGCCGCTGTTCCCGAACAAGC < 6:161764/135‑1 CGAAAACCTGACGCCGCTGTTCCCGAACAAGCGCCTGAAGATGGAGGCCGGTAACGGCTCCACCGAGGACTTGACCGGTCGCGTCATCGACCTGTGCGCCCCGATCGGCAAAGGCCAGCGCGGCCTGATCGTTGCCCCGCCGAAAGCC < 2:264374/148‑1 GAAAACCTGACGCCGCTGTTCCCGAACAAGCGCCTGAAGATGGAGGCCGGTAACGGCTCCACCGAGGACTTGACCGGTCGCGTCATCGACCTGTGCGCCCCGATCGGCAAAGGCCAGCGCGGCCTGATCGTTGCCCCGCCGAAAGCCGG > 3:179300/1‑149 GAAAACCTGACGCCGCTGTTCCCGAACAAGCGCCTGAAGATGGAGGCCGGTAACGGCTCCACCGAGGACTTGACCGGTCGCGTCATCGACCTGTGCGCCCCGATCGGCAAAGGCCAGCGCGGCCTGATCGTTGCCCCGCCGAAAGCCG < 8:9000/148‑1 GCAATGTTCTGCAGCATGATCGTCTTACCGGCTTTCGGCGGGGCAACGATCAGGCCGCGCTGGCCTTTGCCGATCGGGGCGCACAGGTCGATGACGCGACCGGTCAAGTCCTCGGTGGAGCCGTTACCGGCCTCCATCTTCAGGCGCTTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5947899‑5948052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttcgAAAACCTGACGCCGCTGTTCCCGAACAAGCGCCTGAAGATGGAGGCCGGTAACGGCTCCACCGAGGACTTGACCGGTCGCGTCATCGACCTGTGCGCCCCGATCGGCAAAGGCCAGCGCGGCCTGATCGTTGCCCCGCCGAAAGCCGG < NC_002947/5948073‑5947926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |