| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5992293 = | 84 (1.350) | 3 (0.050) | 3/244 | NT | 4.1% | coding (284/1263 nt) | opdB | proline‑specific outer membrane porin D |
| ? | NC_002947 | 5992363 = | 62 (1.090) | coding (354/1263 nt) | opdB | proline‑specific outer membrane porin D | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGCGTTTGTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5992450‑5992293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgccgcGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGC > NC_002947/5992363‑5992507 CAGGCGTTTGTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGC < 3:142416/149‑1 AGGCGTTTGTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGAGCGGCCATCGCTGTCGCGTGGCAGCAGGCC > 1:252454/1‑149 CGTTTGTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGT < 2:169693/149‑1 aaaccCCGGTGTTCGACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCG > 4:178406/6‑149 GTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCG < 1:175777/148‑1 GCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGA > 2:72666/1‑148 CGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGAC > 7:84843/1‑148 TACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGA < 8:84843/148‑1 CCGGTGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGAC > 3:220343/1‑149 TGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGC < 2:175777/149‑1 TGCCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGC < 2:74387/149‑1 agcCGCTCAAACTGCAGTTAGCCAACACCCAACTGCGCTATGGCGAGATGAGGGTCGAAACCCCGGTGTTCGACACCGGTGACACCCGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGC < 1:311882/146‑1 CCGCGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGC < 6:122934/149‑1 CAGGCGTTTGTCACCGGTGTCGAACACCGGGGTTTCCACCATCATCTCGCCATAGCGCAGTTGGGTGTTGCCTAACTGCATTTTGAGCGCGGCACCGGCGCTGGAGTACTCGGACTCGGCGCGGCCATCGCTGTCGCGTGGCAGCAGGCCGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5992450‑5992293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgccgcGCTCAAAATGCAGTTAGGCAACACCCAACTGCGCTATGGCGAGATGATGGTGGAAACCCCGGTGTTCGACACCGGTGACAAACGCCTGCACCCGGAATACGCCACCGGCTGGTGGGTGGAAAACACCGACCAGCCCGACTGGCGC > NC_002947/5992363‑5992507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |