New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6179829	77 (1.240)	6 (0.100)	5/252	NT	7.6%	coding (290/471 nt)	atpF	ATP synthase subunit b
	?	NC_002947	= 6179860	73 (1.240)					coding (259/471 nt)	atpF	ATP synthase subunit b

CAGCTCCGCATGCGCGTTTTGATCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6179675‑6179829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcttGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGTGTGAAGGCTCAGGCTCTGGCCGAGATCGAACAGGAACTGAACAGCGCTAAAGACGCCCTGCGTGCCCAAGTGGGTGCTCTGGCCGTTGGTGGTGCTGAAAAGA  <  NC_002947/6179860‑6179716                                                                                                                                                                                                                                                                                                              CAGCTCCGCATGCGCGTTTTGATCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCATGGCGTCTTTAGCGCTGTTCAGTTCCTGTTAGATCTCGGCCAGAGCCTGAGCCTTCACACGGT                                                                                                                                                         >  1:361855/1‑149  AGCTCCGCATGCGCGTTTTGATCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTC                                                                                                                                                        <  8:220868/149‑1                 TTTTGATCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAG                                                                                                                                         >  3:138480/1‑149                       TCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCA                                                                                                                                                       >  3:25149/1‑129                       TCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCA                                                                                                                                                       <  4:25149/129‑1                                    CAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGT                                                                                                                      <  1:167532/149‑1                                    CAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGT                                                                                                                      <  7:44042/149‑1                                              TTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGGCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGA                                                                                                             <  2:64394/148‑1                                                 AGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGT                                                                                                         <  4:138480/149‑1                                                 AGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCG                                                                                                          <  8:77558/148‑1                                                                                                                                                     TCAGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGTGTGAAGGCTCAGGCTCTGGCCGAGATCGAACAGGAACTGAACAGCGCTAAAGACGCCCTGCGTGCCCAAGTGGGTGCTCTGGCCGTTGGTGGTGCTGAA      >  2:372921/1‑148                                                                                                                                                       AGCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGTGTGAAGGCTCAGGCTCTGGCCGAGATCGAACAGGAACTGAACAGCGCTAAAGACGCCCTGCGTGCCCAAGTGGGTGCTCTGGCCGTTGGTGGTGCTGAA      >  8:152359/1‑146                                                                                                                                                        GCTTGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGTGTGAAGGCTCAGGCTCTGGCCGAGATCGAACAGGAACTGAACAGCGCTAAAGACGCCCTGCGTGCCCAAGTGGGTGCTCTGGCCGTTGGTGGTGCTGAAAAGA  <  2:381285/149‑1                                                                                                                                                                                                                                                                                                              CAGCTCCGCATGCGCGTTTTGATCGATTGTGGCGCCAAGGATCTTTTCAGCACCACCAACGGCCAGAGCACCCACTTGGGCACGCAGGGCGTCTTTAGCGCTGTTCAGTTCCTGTTCGATCTCGGCCAGAGCCTGAGCCTTCACACGGTCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6179675‑6179829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcttGTCGACGAAGCCCGTGAACAGGCTCGCGTCGAAGCTGACCGTGTGAAGGCTCAGGCTCTGGCCGAGATCGAACAGGAACTGAACAGCGCTAAAGACGCCCTGCGTGCCCAAGTGGGTGCTCTGGCCGTTGGTGGTGCTGAAAAGA  <  NC_002947/6179860‑6179716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.