New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1117691 =	43 (0.690)	3 (0.050)	3/250	NT	6.5%	coding (141/2847 nt)	valS	valine‑‑tRNA ligase
	?	NC_002947	1117750 =	46 (0.790)					coding (82/2847 nt)	valS	valine‑‑tRNA ligase

CTTTGGCTTCAAGTTGGCGCTCGACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATCCATGCGCGGC  >  NC_002947/1117546‑1117838                                                                                                                                                  |                                                                                                                                                    cTTTGTCTTCAAGTTGGCGCTCGACTAGCATCTGCGTGGCGATACCCGAGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGc                                                                                                                                                  <  6:109933/149‑1 (MQ=255)  tttGGCTTCAAGTTGGCGCTCGACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCAtgtg                                                                                                                                                   >  2:73592/1‑147 (MQ=255)    tGGCTTCAAGTTGGCGCTCGACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAg                                                                                                                                                <  1:73592/148‑1 (MQ=255)       cccagcttggttatacttcccggctttcccgaataaatgcacagggtcccgccgcgcatggataagacctaccagccgcacgcaatcgaaacttcctggtacaacacctgggagtccgagaactatttcgctccacaagGTGCAGGc                                                                                                                                              <  3:245184‑M1/8‑1 (MQ=255)                       gACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTcgg                                                                                                                              <  7:212912/147‑1 (MQ=255)                       gACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGCGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATCTGCAGGCTGCCGGTTACGTTcggcg                                                                                                                            >  2:131736/1‑149 (MQ=255)                             cATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTcggcggcgg                                                                                                                        <  8:333665/147‑1 (MQ=255)                             cATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGa                                                                                                                      <  3:365999/149‑1 (MQ=255)                             cATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGa                                                                                                                      >  5:168890/1‑149 (MQ=255)                             cATCTGCGGGTGGCTACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGa                                                                                                                      <  1:135882/149‑1 (MQ=255)                                   cctGGCGATACCCGCGGGATCGCGGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCatga                                                                                                                <  2:171740/147‑1 (MQ=255)                                   cGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATc                                                                                                                    <  6:168890/145‑1 (MQ=255)                                    gTGGCGATACCCGCGTGATCGGTGCCTGCCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCatgat                                                                                                               >  1:220144/1‑149 (MQ=255)                                         gATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCTCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGgtgt                                                                                                          >  4:259345/1‑149 (MQ=255)                                            aCCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAg                                                                                                        >  4:23570/1‑148 (MQ=255)                                              ccGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCatgatg                                                                                                              >  8:19442/1‑140 (MQ=255)                                              ccGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCatgatg                                                                                                              <  7:19442/140‑1 (MQ=255)                                                 agggtcccgccgcgcatggataagacctaccagccgcacgcaatcgaaacttcctggtacaacacctgggagtccgagaactatttcgctccacaagGTGCAGGCTGCCGGTTACGTTCGGTGGCGGGATCATGATGGTGTAGGACTCg                                                                                                  <  4:34783‑M1/52‑1 (MQ=255)                                                   tGATCGGTGCCTGGCTGCCACAGCGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGcc                                                                                                >  8:5267/1‑149 (MQ=255)                                                    gATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCt                                                                                               >  2:95064/1‑149 (MQ=255)                                                    gATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCt                                                                                               >  8:77964/1‑149 (MQ=255)                                                        cgccgcgcatggataagacctaccagccgcacgcaatcgaaacttcctggtacaacacctgggagtccgagaactatttcgctccacaagGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCAc                                                                                           >  7:342919‑M1/91‑149 (MQ=255)                                                           cgcgcatggataagacctaccagccgcacgcaatcgaaacttcctggtacaacacctgggagtccgagaactatttcgctccacaagGTGCAGGCTGCCGGTTACGTTCGGTGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCtt                                                                                        >  3:34783‑M1/88‑149 (MQ=255)                                                             cTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGTATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgt                                                                                      <  7:349760/149‑1 (MQ=255)                                                             cTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgt                                                                                      <  3:23570/149‑1 (MQ=255)                                                             cTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCCGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgt                                                                                      >  7:320105/1‑149 (MQ=255)                                                              tGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgtg                                                                                     >  3:64546/1‑149 (MQ=255)                                                                gCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgtg                                                                                     <  3:259345/147‑1 (MQ=255)                                                                gCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTtgtg                                                                                     >  5:67557/1‑147 (MQ=255)                                                                    ccACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGAGCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGc                                                                                 <  8:271816/147‑1 (MQ=255)                                                                        aGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATa                                                                           <  1:210737/149‑1 (MQ=255)                                                                        aGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATa                                                                           <  1:95064/149‑1 (MQ=255)                                                                            tgtCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCt                                                                                               <  2:215435/125‑1 (MQ=255)                                                                              tCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTtctc                                                                     >  8:179095/1‑149 (MQ=255)                                                                                             cggcggAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAATTAGTTCTCGGACTCCCAGGtgtt                                                      <  7:242612/149‑1 (MQ=255)                                                                                             cggcggAAAAGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGTATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGtgtt                                                      <  3:25701/149‑1 (MQ=255)                                                                                               gcggAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGtgttgt                                                    <  7:179095/149‑1 (MQ=255)                                                                                                       ggATCAGGGCGTCCATGATCGCGGTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAgg                                              >  1:349598/1‑147 (MQ=255)                                                                                                             gggCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGttt                                        >  1:382670/1‑147 (MQ=255)                                                                                                             gggCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGttt                                        <  2:382670/147‑1 (MQ=255)                                                                                                             gggCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTc                                       >  7:43176/1‑148 (MQ=255)                                                                                                              ggCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGa                                     <  6:167513/149‑1 (MQ=255)                                                                                                                  tCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATTGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATtgc                                 <  8:320105/149‑1 (MQ=255)                                                                                                                   ccATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATtgcg                                >  1:273596/1‑149 (MQ=255)                                                                                                                    cATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATACTTCTCGGACTCCCAGGTTTTGTACCAGGAAGTTTCGATtgcgt                               >  7:181686/1‑149 (MQ=255)                                                                                                                            cgTTGTTGATCGCGTGGCCCATGTGCAGGGTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTATGACTGGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGTCTCCCAGGTGTTGTACCAGGAATTTTCGATTGCGTGCGGCTgg                       <  2:349598/149‑1 (MQ=255)                                                                                                                            cgTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGCCTCCGAGGTGTTGTACCCGGAAGTTTCGATTGCGTGCGGCTgg                       >  6:112890/1‑149 (MQ=255)                                                                                                                              ttgttgAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTgg                       >  3:158398/1‑147 (MQ=255)                                                                                                                                       ccGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCACAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATc            >  2:243590/1‑149 (MQ=255)                                                                                                                                              ccATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGgtg                                                        <  7:91505/98‑1 (MQ=255)                                                                                                                                              ccATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGgtg                                                        >  8:91505/1‑98 (MQ=255)                                                                                                                                              ccATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATCCATgcgc     >  2:47026/1‑149 (MQ=255)                                                                                                                                              ccATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATCCATgcgc     >  6:213175/1‑149 (MQ=255)                                                                                                                                               cATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATc            <  8:21606/141‑1 (MQ=255)                                                                                                                                               cATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATc            >  7:21606/1‑141 (MQ=255)                                                                                                                                                 tgtgCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATCCATGCgcggc  <  7:5267/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTTTGGCTTCAAGTTGGCGCTCGACCAGCATCTGCGTGGCGATACCCGCGTGATCGGTGCCTGGCTGCCACAGGGTGTCGCGGCCTTGCATGCGGCGGAAACGGATCAGGGCGTCCATGATCGCGTTGTTGAACCCGTGGCCCATGTGCAGGCTGCCGGTTACGTTCGGCGGCGGGATCATGATGGTGTAGGACTCGCCTGCACCTTGTGGAGCGAAATAGTTCTCGGACTCCCAGGTGTTGTACCAGGAAGTTTCGATTGCGTGCGGCTGGTAGGTCTTATCCATGCGCGGC  >  NC_002947/1117546‑1117838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.