New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2331588 =	37 (0.600)	4 (0.070)	4/252	NT	8.2%	coding (132/1164 nt)	PP_2049	alcohol dehydrogenase
	?	NC_002947	2331635 =	55 (0.940)					coding (179/1164 nt)	PP_2049	alcohol dehydrogenase

CGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCTGGTGGTGG  >  NC_002947/2331440‑2331736                                                                                                                                                        |                                                                                                                                                     cGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACAGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATc‑gcccgc                                                                                                                                                      <  3:73268/149‑1 (MQ=255)     cAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTg                                                                                                                                                  <  7:227345/149‑1 (MQ=255)     cAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTg                                                                                                                                                  <  7:214877/149‑1 (MQ=255)     cAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTg                                                                                                                                                  >  4:207819/1‑149 (MQ=255)       gcaaccagcttggccacatccatcgagctgccgccgccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCtt                                                                                                                                                   >  7:278250‑M1/146‑149 (MQ=255)       gcaaccagcttggccacatccatcgagctgccgccgccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCtt                                                                                                                                                   >  6:142855‑M1/146‑149 (MQ=255)         aaccagcttggccacatccatcgagctgccgccgccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCTTgg                                                                                                                                                 >  4:158270‑M1/144‑149 (MQ=255)         aaccagcttggccacatccatcgagctgccgccgccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctgaggtcggccgtaacctcactgaagatcgccacaccgaCCTTgg                                                                                                                                                 <  2:262917‑M1/6‑1 (MQ=255)             gTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTc                                                                                                                                          <  8:232223/149‑1 (MQ=255)                cGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGAt                                                                                                                                       <  7:164096/149‑1 (MQ=255)                   tGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGAc                                                                                                                                    >  3:18584/1‑149 (MQ=255)                        ccTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGAGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACctg                                                                                                                                 >  1:111265/1‑149 (MQ=255)                        atccatcgagctgccgccgccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCTTGGCATGCTCGATGACct                                                                                                                                  <  7:283812‑M1/21‑1 (MQ=255)                              aGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCAT‑‑GCAGGTCTGTGCCGTCAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCggg                                                                                                                         >  3:18468/1‑149 (MQ=255)                                     ccaccaCTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCAc                                                                                                                   <  1:109076/148‑1 (MQ=255)                                      caccacTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACgg                                                                                                                 >  2:352907/1‑149 (MQ=255)                                        ccacTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCCGGGTTCACGGCa                                                                                                               <  3:207819/149‑1 (MQ=255)                                           ccgaaccccaccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCa                                                                                                               <  3:34635‑M1/40‑1 (MQ=255)                                               gcAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAgg                                                                                                        >  2:258832/1‑149 (MQ=255)                                                    tCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCTGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGgt                                                                                                   <  1:309766/149‑1 (MQ=255)                                                     ccaccaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCg                                                                                                     >  4:34635‑M1/100‑149 (MQ=255)                                                       accaggtcggcgccgatatgccgggcgcgctgggcggccgccagcacgcatgcctcgctggggtcggccgtaacctcactgaagatcgccacaccgaCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGgt                                                                                                   >  8:283812‑M1/98‑149 (MQ=255)                                                             aaCCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATc                                                                                          >  5:18190/1‑149 (MQ=255)                                                                ccGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCtt                                                                                        >  2:320730/1‑148 (MQ=255)                                                                   gcgcGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCTCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGACTTGGCATGCTCGAAGACCTGCTGGCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGt                                                                                    >  5:330676/1‑149 (MQ=255)                                                                       ggTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTGCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAgg                                                                                <  7:222567/149‑1 (MQ=255)                                                                                      gCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATCAGCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGAcc                                                                    >  1:305171/1‑149 (MQ=255)                                                                                               tgCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAgg                                                           <  1:352907/148‑1 (MQ=255)                                                                                               tgCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAg                                                            <  7:73197/147‑1 (MQ=255)                                                                                                    tGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCg                                                     >  2:379640/1‑149 (MQ=255)                                                                                                             tGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTggcgg                                            <  6:18190/149‑1 (MQ=255)                                                                                                               ccAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGgcc                                          <  7:317485/149‑1 (MQ=255)                                                                                                                    cGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCa                                     <  8:97670/149‑1 (MQ=255)                                                                                                                        ttttGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAgcgc                                 >  2:183441/1‑149 (MQ=255)                                                                                                                        ttttGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAgcgc                                 >  4:201271/1‑149 (MQ=255)                                                                                                                         tttGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAgcgcg                                >  5:47989/1‑149 (MQ=255)                                                                                                                         tttGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAgcgcg                                >  5:53572/1‑149 (MQ=255)                                                                                                                                aTCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGAGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCTGc                          <  5:72765/148‑1 (MQ=255)                                                                                                                                       aCCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGgc                  >  2:111672/1‑149 (MQ=255)                                                                                                                                       aCCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGgc                  <  2:305171/149‑1 (MQ=255)                                                                                                                                        cccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGTCGCCCAGCGCGCCCGGCATATCGgcg                 >  2:380568/1‑149 (MQ=255)                                                                                                                                        cccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCgg                           >  4:325319/1‑139 (MQ=255)                                                                                                                                        cccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCgg                           <  3:325319/139‑1 (MQ=255)                                                                                                                                         ccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCTCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGgcgc                >  1:262917/1‑149 (MQ=255)                                                                                                                                         ccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGgcgc                >  2:170266/1‑149 (MQ=255)                                                                                                                                         ccGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGgcgc                >  2:36176/1‑149 (MQ=255)                                                                                                                                          cGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGcc               <  1:379640/149‑1 (MQ=255)                                                                                                                                             gTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGAc            <  4:18584/149‑1 (MQ=255)                                                                                                                                               aTC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCAAGCGCGGCATGCGTGCTGGCGGCCGCCCCGCGCGCCCGGGATATCGGCGCCGAcat          >  8:333171/1‑147 (MQ=255)                                                                                                                                                   gcccgccTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggt       >  4:378781/1‑149 (MQ=255)                                                                                                                                                    cccgccTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggtg      >  4:282807/1‑149 (MQ=255)                                                                                                                                                    cccgccTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggtg      >  1:62158/1‑149 (MQ=255)                                                                                                                                                    cccgccTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggtg      >  2:80284/1‑149 (MQ=255)                                                                                                                                                    cccgccTTGGCATGCTCGATGACCTGCTGCCGGGGATAACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggtg      >  1:254533/1‑149 (MQ=255)                                                                                                                                                        CCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCtggtggtgg  >  2:62158‑M1/1‑149 (MQ=255)                                                                                                                                                        |                                                                                                                                                     CGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTT‑‑GCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC‑GCCCGCCTTGGCATGCTCGATGACCTGCTGCCGGGGTTCACGGCAGCCAAGGTCGGTGTGGCGATCTTCAGTGAGGTTACGGCCGACCCCAGCGAGGCATGCGTGCTGGCGGCCGCCCAGCGCGCCCGGCATATCGGCGCCGACCTGGTGGTGG  >  NC_002947/2331440‑2331736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.