New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3296377 =	45 (0.730)	4 (0.070)	3/246	NT	9.1%	intergenic (‑246/+6)	PP_2896/PP_2898	hypothetical protein/hypothetical protein
	?	NC_002947	3296441 =	38 (0.660)					coding (434/492 nt)	PP_2898	hypothetical protein

GCTAGGCGGCATATGGGTTGGGGGTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGCCGATGAC  >  NC_002947/3296229‑3296523                                                                                                                                                     |                                                                                                                                                    gCTAGGCGGCATATGGGGTGGGGGGTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGc                                                                                                                                                     <  7:70658/149‑1 (MQ=255)  cTAGGCGGCATATGGGTTGGGGGTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCa                                                                                                                                                    >  8:18047/1‑149 (MQ=255)     cgaccaggcacagccactgaatcagacccaggtactgtaccgccgccactttgccgaccaggtcatcggccagcgcaacggccagccgttgcacgcgctgtgcctgctggtcgattggcgcacgttgccgccgagcatgcgcgcCAccc                                                                                                                                                 <  2:63528‑M1/5‑1 (MQ=255)          cATATGGGTTGGGGGTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCaa                                                                                                                                            <  6:236965/149‑1 (MQ=255)            tatGGGTCGGGGGTTGCAGCGTCGGAGAACAGGATTTGCCGGCAGCGATCTCTCGCGCGGTAGGACATGGCGTGCACATCTGGCTGCGCCTCCCGGTTTCCGGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATc                                                                                                                                          <  6:314509/149‑1 (MQ=255)                 gTTGGGGGTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACg                                                                                                                                     <  7:18047/149‑1 (MQ=255)                        gTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgct                                                                                                                              >  7:32643/1‑149 (MQ=255)                         ttGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgctg                                                                                                                             >  2:309250/1‑149 (MQ=255)                            tAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgctgct                                                                                                                           >  3:244267/1‑148 (MQ=255)                            tAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgctgct                                                                                                                           >  7:238574/1‑148 (MQ=255)                            tAGCTTCGGTGAACAGGATTTGCAGGCAGCGACATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgctgct                                                                                                                           <  3:220263/148‑1 (MQ=255)                             aGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAgctgct                                                                                                                           >  2:11022/1‑147 (MQ=255)                               cTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAg                                                                                                                        >  6:244224/1‑148 (MQ=255)                                       aaCAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGgc                                                                                                              <  4:227228/149‑1 (MQ=255)                                       aaCAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACACCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGgc                                                                                                              >  1:143092/1‑149 (MQ=255)                                        aCAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGgcg                                                                                                             <  8:32643/149‑1 (MQ=255)                                                  caggcagCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGAt                                                                                                   <  5:244224/149‑1 (MQ=255)                                                      cagCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGCTGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGc                                                                                               >  8:220632/1‑149 (MQ=255)                                                         cGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCtt                                                                                             >  2:242305/1‑148 (MQ=255)                                                           cgaccaggtcatcggccagcgcaacggccagccgttgcacgcgctgtgcctgctggtcgattggcgcacgttgccgccgagcatgcgcgcCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAg                                                                                          <  6:252270‑M1/59‑1 (MQ=255)                                                           atatCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAg                                                                                          >  1:201485/1‑149 (MQ=255)                                                             accaggtcatcggccagcgcaacggccagccgttgcacgcgctgtgcctgctggtcgattggcgcacgttgccgccgagcatgcgcgcCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAggg                                                                                        >  5:252270‑M1/89‑149 (MQ=255)                                                             accaggtcatcggccagcgcaacggccagccgttgcacgcgctgtgcctgctggtcgattggcgcacgttgccgccgagcatgcgcgcCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAggg                                                                                        >  5:149450‑M1/89‑149 (MQ=255)                                                               caggtcatcggccagcgcaacggccagccgttgcacgcgctgtgcctgctggtcgattggcgcacgttgccgccgagcatgcgcgcCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGt                                                                                      >  3:258691‑M1/87‑149 (MQ=255)                                                                  gcgcTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGGACCCCTCAATCGCACGGGTAGCTGCTCAGCAAACCTGGCGCTACCCAGACAGGCTTGAggg                                                                                        <  1:11022/145‑1 (MQ=255)                                                                    gcTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGgcg                                                                                  >  5:15625/1‑148 (MQ=255)                                                                        tAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCAt                                                                             <  6:82623/149‑1 (MQ=255)                                                                            aaaTGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTc                                                                         <  3:161043/149‑1 (MQ=255)                                                                             aaTGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGATCAGCAAA‑CTGGCGCTAACCAGATAGGCTTGATGGGTGGCGCGCATGCTcg                                                                        >  6:150257/1‑149 (MQ=255)                                                                               tGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTcggc                                                                      >  4:358828/1‑149 (MQ=255)                                                                               tGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGCTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTcggc                                                                      <  5:22299/149‑1 (MQ=255)                                                                                   gTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCggcggc                                                                   >  1:129441/1‑148 (MQ=255)                                                                                         aTCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTgc                                                            <  8:238574/149‑1 (MQ=255)                                                                                         aTCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCACTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGt                                                                                      >  4:197456/1‑123 (MQ=255)                                                                                         aTCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCACTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGt                                                                                      <  3:197456/123‑1 (MQ=255)                                                                                           cTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACgg                                                                                                                                    >  8:257897/1‑76 (MQ=255)                                                                                           cTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACgg                                                                                                                                    <  7:257897/76‑1 (MQ=255)                                                                                              gCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCaa                                                       >  5:235100/1‑149 (MQ=255)                                                                                                tGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATc                                                     >  6:39122/1‑149 (MQ=255)                                                                                                  cgcCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATc                                                     <  1:309250/147‑1 (MQ=255)                                                                                                     ctcctGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGAc                                                  >  1:341924/1‑147 (MQ=255)                                                                                                     ctcctGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGAc                                                  >  4:354971/1‑147 (MQ=255)                                                                                                      tcctGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACcag                                               >  7:100920/1‑149 (MQ=255)                                                                                                               ccTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGcaca                                       <  6:235100/148‑1 (MQ=255)                                                                                                                cTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAgc                                     >  4:68670/1‑149 (MQ=255)                                                                                                                cTGTCGGGGCGCTCGCGAGGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAgc                                     <  6:15452/149‑1 (MQ=255)                                                                                                                  gTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAgcgc                                   >  3:58228/1‑149 (MQ=255)                                                                                                                   tCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAgcgc                                   <  2:143092/148‑1 (MQ=255)                                                                                                                              gcgATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTg                       >  3:293086/1‑149 (MQ=255)                                                                                                                              gcgATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTg                       <  4:255592/149‑1 (MQ=255)                                                                                                                                              ggTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCTAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGcc        >  1:23430/1‑148 (MQ=255)                                                                                                                                              ggTACAGCACCCCTCAATCGCACGGGTAGCTACTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGcc        >  5:59136/1‑148 (MQ=255)                                                                                                                                                tACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGCCGAt     <  8:100920/149‑1 (MQ=255)                                                                                                                                                   aGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGCCGATGAc  >  3:150068/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCTAGGCGGCATATGGGTTGGGGGTTGTAGCTTCGGTGAACAGGATTTGCAGGCAGCGATATCTGGCGCTGTAGGAAATGGCGTGGACATCTGGCTGCGCCTCCTGGTTTCCTGTCGGGGCGCTCGCGATGATGTGCAGTGGGTACAGCACCCCTCAATCGCACGGGTAGCTGCTCAGCAAA‑CTGGCGCTACCCAGATAGGCTTGAGGGGTGGCGCGCATGCTCGGCGGCAACGTGCGCCAATCGACCAGCAGGCACAGCGCGTGCAACGGCTGGCCGTTGCGCTGGCCGATGAC  >  NC_002947/3296229‑3296523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.