BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5770531	97 (1.560)	3 (0.050)	3/256	NT	3.2%	coding (341/4716 nt)	PP_5060	hypothetical protein
*	?	NC_002947	= 5770566	90 (1.510)	3 (0.050)	3/256	NT	3.2%	coding (306/4716 nt)	PP_5060	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

GTGCCGTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAG  >  NC_002947/5770390‑5770679

gTGCCGTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAgcg                                                                                                                                               >  2:39855/1‑149 (MQ=255)

 tGCCGTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAgcgc                                                                                                                                              >  2:249387/1‑149 (MQ=255)

 tGCCGTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAgcgc                                                                                                                                              <  4:168306/149‑1 (MQ=255)

     gTCGCCGTTCCAATAGTTGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGaaa                                                                                                                                                    <  2:22051/139‑1 (MQ=255)

     gTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCggg                                                                                                                                          >  5:96194/1‑149 (MQ=255)

        gCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAACGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGc                                                                                                                                        <  1:198445/148‑1 (MQ=255)

        gCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGc                                                                                                                                        <  5:4508/148‑1 (MQ=255)

         ccGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCgg                                                                                                                                      <  6:350668/149‑1 (MQ=255)

              ccAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGtt                                                                                                                                   >  2:37697/1‑147 (MQ=255)

               cAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCa                                                                                                                                 <  1:298469/148‑1 (MQ=255)

               cAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAg                                                                                                                                <  4:328820/149‑1 (MQ=255)

                aaTAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTTGATGGCGAAAAAGCGCCGGGGCGGGTTCAgg                                                                                                                               <  1:39855/149‑1 (MQ=255)

                aaTAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAgg                                                                                                                               >  1:367348/1‑149 (MQ=255)

                aaTAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAgg                                                                                                                               >  2:336055/1‑149 (MQ=255)

                 aTAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGc                                                                                                                              <  1:249387/149‑1 (MQ=255)

                 aTAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGc                                                                                                                              >  1:358231/1‑149 (MQ=255)

                    gTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTaa                                                                                                                           <  1:115009/149‑1 (MQ=255)

                        aTCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCg                                                                                                                       >  4:381893/1‑149 (MQ=255)

                        aTCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCg                                                                                                                       >  6:278150/1‑149 (MQ=255)

                        aTCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCg                                                                                                                       >  6:283402/1‑149 (MQ=255)

                             cgcTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGc                                                                                                                        <  7:268008/143‑1 (MQ=255)

                             cgcTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCgg                                                                                                                      <  3:267394/145‑1 (MQ=255)

                             cgcTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCgg                                                                                                                      <  4:106631/145‑1 (MQ=255)

                             cgcTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGt                                                                                                                  <  2:194620‑M2/149‑2 (MQ=255)

                                    tGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTcgcccgc                                                                                                           >  2:73995/1‑149 (MQ=255)

                                      gAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGActaccgccttagcctgaacccgccccggcgctttttcgccatcga                                                                                                         <  1:27397‑M1/149‑46 (MQ=255)

                                         gTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCgggg                                                                                                      <  1:336055/149‑1 (MQ=255)

                                          tGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAACGCGGTAGTCGCCCGCCGGGGc                                                                                                     >  3:100694/1‑149 (MQ=255)

                                            ccAAAGCAGCATTGGCAGCAACGCGTTCAGGTCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGa                                                                                                   <  4:310/149‑1 (MQ=255)

                                            ccAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCTGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGc                                                                                                     <  6:82772/147‑1 (MQ=255)

                                            ccAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGc                                                                                                     >  5:82772/1‑147 (MQ=255)

                                            ccAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGc                                                                                                     >  1:178967/1‑147 (MQ=255)

                                             cAAAGCAGCATTGGCAGCAACGCGTTCAGGCCAGCGGTCACGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTAGCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGGTCAGGCTCAGGCGGTAGGCGCCCGCCGGGGCGAg                                                                                                  <  1:298104/149‑1 (MQ=255)

                                              aaaGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAgg                                                                                                 >  8:247427/1‑149 (MQ=255)

                                              aaaGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAgg                                                                                                 <  2:178967/149‑1 (MQ=255)

                                                  cagcaTTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCa                                                                                             <  6:197773/149‑1 (MQ=255)

                                                    gcaTTGGCAGCAACGCGTTCAGGCCATCGGTCAGCCGCGCGCGCTCCATCAAATCGCCCTCAGCCGTTTGCAAGCTCGACTCGATGGCGAAAAAGCTCAGCGCCCCGTACACGCTACGGCGGTAGTCGCCCCCCGCGGCCAGGACCAGt                                                                                           >  4:252853/1‑149 (MQ=255)

                                                     caTTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGTTCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTg                                                                                          <  4:351433/149‑1 (MQ=255)

                                                     caTTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTg                                                                                          <  2:367348/149‑1 (MQ=255)

                                                     caTTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTg                                                                                          >  3:285630/1‑149 (MQ=255)

                                                      aTTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTgg                                                                                         <  4:379442/149‑1 (MQ=255)

                                                       ttGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGt                                                                                        <  1:336527/149‑1 (MQ=255)

                                                          gcagcaACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTa                                                                                     <  1:37697/149‑1 (MQ=255)

                                                           cagcaACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAg                                                                                    >  6:179112/1‑149 (MQ=255)

                                                            agcaACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGc                                                                                   >  3:377108/1‑149 (MQ=255)

                                                               aaCGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGtt                                                                                       >  4:346195/1‑142 (MQ=255)

                                                               aaCGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGtt                                                                                       <  3:346195/142‑1 (MQ=255)

                                                                  gcgTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAg                                                                             <  7:247427/149‑1 (MQ=255)

                                                                     ttCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGa                                                                                                   >  3:298178/1‑124 (MQ=255)

                                                                     ttCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGa                                                                                                   <  4:298178/124‑1 (MQ=255)

                                                                        aGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAggg                                                                        <  7:5628/148‑1 (MQ=255)

                                                                          gCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGActaccgccttagcctgaacccgccccggcgctttttcgccat                                                                                                            >  8:351255‑M1/1‑68 (MQ=255)

                                                                          gCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGActaccgccttagcctgaacccgccccggcgctttttcgccat                                                                                                            <  7:351255‑M1/110‑43 (MQ=255)

                                                                          gCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCt                                                                     >  2:138771/1‑149 (MQ=255)

                                                                          gCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCt                                                                     >  7:49036/1‑149 (MQ=255)

                                                                           ccATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTg                                                                    <  1:194620/149‑1 (MQ=255)

                                                                            cATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTgc                                                                   <  4:285630/149‑1 (MQ=255)

                                                                            cATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTg                                                                    >  2:248256/1‑148 (MQ=255)

                                                                            cATCCGTCAGGCGCGGGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTgc                                                                   <  1:148410/149‑1 (MQ=255)

                                                                             aTCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTgca                                                                  <  5:283402/149‑1 (MQ=255)

                                                                             aTCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTgca                                                                  <  5:278150/149‑1 (MQ=255)

                                                                                       cgcgcgGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATc                                                        <  1:170988/149‑1 (MQ=255)

                                                                                       cgcgcgGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAACGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATc                                                        <  4:100694/149‑1 (MQ=255)

                                                                                                  gATGAAATCGCCCTGAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGc                                              <  3:252853/148‑1 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCTGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCt                                             >  5:235498/1‑149 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCCGTTTCGAAGCTCGCCTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCt                                             >  7:261961/1‑149 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAACGCGCCGGGGCGGGTTCAGTCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCgg                                               <  8:236914/147‑1 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAgg                                                                         <  1:230/121‑1 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAgg                                                                         >  2:230/1‑121 (MQ=255)

                                                                                                  gATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACAAGCGGCt                                             >  3:310756/1‑149 (MQ=255)

                                                                                                   aTCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCt                                             >  1:204684/1‑148 (MQ=255)

                                                                                                   aTCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTg                                            <  4:377108/149‑1 (MQ=255)

                                                                                                    tCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGa                                           <  5:112087/149‑1 (MQ=255)

                                                                                                      aaaTCGCCCTCAGCCGTTTCGATGGTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTATGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTTGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAgg                                         <  1:5499/149‑1 (MQ=255)

                                                                                                       aaTCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAggg                                        >  7:334978/1‑149 (MQ=255)

                                                                                                           gCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGcc                                    <  4:117358/149‑1 (MQ=255)

                                                                                                           gCCATCAGCCGCTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGGCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGgcgc                                     <  8:289580/148‑1 (MQ=255)

                                                                                                             ccTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGtt                                                                                       >  2:289782/1‑96 (MQ=255)

                                                                                                             ccTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGtt                                                                                       <  1:289782/96‑1 (MQ=255)

                                                                                                               tCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTg                                                                                          <  5:126233/91‑1 (MQ=255)

                                                                                                               tCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTg                                                                                          >  6:126233/1‑91 (MQ=255)

                                                                                                               tCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGgcgc                                     >  6:272966/1‑144 (MQ=255)

                                                                                                               tCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGgcgc                                     <  5:272966/144‑1 (MQ=255)

                                                                                                                 aGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGacac                              >  2:130977/1‑149 (MQ=255)

                                                                                                                 aGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGaca                               <  8:334978/148‑1 (MQ=255)

                                                                                                                     gTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATc                          >  1:68485/1‑149 (MQ=255)

                                                                                                                           aaGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTg                    >  8:42080/1‑149 (MQ=255)

                                                                                                                           aaGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCAGCTGAGGGCGCCAGACACCATCCGGCTg                    >  3:154081/1‑149 (MQ=255)

                                                                                                                              ctcgactcgaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAg                 <  1:248256/149‑1 (MQ=255)

                                                                                                                                 gactcgaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGa              <  2:330239/149‑1 (MQ=255)

                                                                                                                                    tcgaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGtcgccatcgagtcgagcttcgaaacggctgagggcgatttgatcgagcccgcgcgcctgaccgatggcctgaacgcgttgctgccaatgctgctttggcacttc           <  1:27397‑M2/149‑105 (MQ=255)

                                                                                                                                      gaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACAt           >  1:147864/1‑147 (MQ=255)

                                                                                                                                      gaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGGCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATc          <  8:261961/148‑1 (MQ=255)

                                                                                                                                       aTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGtcgccatcgagtcgagcttcgaaacggctgagggcgatttgatcgagcccgcgcgcctgaccgatggc                                               <  7:351255‑M2/110‑69 (MQ=255)

                                                                                                                                       aTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGtcgccatcgagtcgagcttcgaaacggctgagggcgatttgatcgagcccgcgcgcctgaccgatggc                                               >  8:351255‑M2/1‑42 (MQ=255)

                                                                                                                                         ggCGActaccgccttagcctgaacccgccccggcgctttttcgccatcgagtcgagcttcgaaacggctgagggcgatttgatcgagcccgcgcgcctgaccgatggcctgaacgcgttgctgccaatgctgctttggcacttccagc       >  6:96194‑M1/1‑5 (MQ=255)

                                                                                                                                            gAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTa     >  5:371008/1‑147 (MQ=255)

                                                                                                                                             actaccgccttagcctgaacccgccccggcgctttttcgccatcgagtcgagcttcgaaacggctgagggcgatttgatcgagcccgcgcgcctgaccgatggcctgaacgcgttgctgccaatgctgctttggcacttccagcaagcg  <  2:194620‑M1/149‑149 (MQ=255)

                                                                                                                                             aaaaaGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAg  <  1:138771/149‑1 (MQ=255)

                                                                                                                                             aaaaaGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCAGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAg  <  4:154081/149‑1 (MQ=255)

GTGCCGTCGCCGTTCCAATAGTCGATCTGCGCTTGCTGGAAGTGCCAAAGCAGCATTGGCAGCAACGCGTTCAGGCCATCGGTCAGGCGCGCGGGCTCGATCAAATCGCCCTCAGCCGTTTCGAAGCTCGACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAG  >  NC_002947/5770390‑5770679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.