| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2258059 | NA (NA) | 5 (0.090) | 3/250 | NT | 17.0% | intergenic (+114/‑278) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 2258152 | 26 (0.420) | intergenic (+207/‑185) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
AACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAG > NC_002947/2258004‑2258299 | aaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCC > 4:57226‑M2/1‑149 (MQ=255) cGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGGCGCAGCGCTTGACGGGCCTCCCTGCCCGGCACCTGCCTCC‑GCAAGGCCgg < 3:338267‑M2/149‑3 (MQ=255) ggCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcggt < 8:198755‑M2/149‑57 (MQ=255) ggCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCggtgtgagggcaccccggagcgcagcgcaggggccggatgatgggagcgcagcgtt < 5:248098‑M2/149‑57 (MQ=255) gCCTTGCTCCAGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttt < 5:312846‑M2/149‑58 (MQ=255) ccTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCCTCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgtttg < 1:267759‑M2/149‑59 (MQ=255) tCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGGGAGCGAGGCCggagtgaggcgaccccggagcggagcgcaggggccggatgatgggggcgcagcggtttttggt < 1:318476‑M2/149‑64 (MQ=255) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac < 3:272198/149‑1 (MQ=11) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagc > 3:599/1‑148 (MQ=32) ccGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaac < 6:82133/149‑1 (MQ=34) ccGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaa > 5:343329/1‑148 (MQ=34) ccGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaa > 4:136640/1‑148 (MQ=34) cGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaac < 3:136038/149‑1 (MQ=37) gCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa < 7:205847/149‑1 (MQ=39) gCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa < 4:352767/149‑1 (MQ=39) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAaagcaacagcaacagcaa > 7:53873/1‑147 (MQ=37) cATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGc > 5:153910/1‑149 (MQ=255) tCCTGGGGCCTCAGCGCTTGACGGGTATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTa < 1:289819/149‑1 (MQ=255) ggggCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAg > 2:108703/1‑148 (MQ=255) gggACTCAGCGCTTGACGGGAATCCATGCCCGTAACCTGCCTCC‑TCAAGGCCTGCGTTATGCATCCTGAAGTCGCTAAGATCAACAACAATATCAAGATCAACATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACCGc < 7:322026/148‑1 (MQ=255) aGCGCTTGACGGGCATCCCTGCCCGTCACATGACTCC‑GCAAGGCCTGCGTTAGGCCTCCTGAAGTCGAGAAGATCAAGATCAAGATCAAGATAAAGAACAAGATCAAGATCAACAGCAACAGCAACAGCAAGAGCTACAGCATTAGGc > 8:84120/1‑148 (MQ=17) ctcgACGGGCATCCATGCCCGTCACGTGCCTCC‑GCAAGGCCTGCGTTCTGCCTCCTGACGTCGCGCAGCTCAAGATCAAGATCTAGATCAAGCTCAAGATCAAGATCAACTGCAACAGCATCAGCAATAGCTACAGCACTAGGCAACGc < 8:137199/146‑1 (MQ=17) gACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTg < 4:599/148‑1 (MQ=255) aCGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTgg < 1:86188/148‑1 (MQ=255) cGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTgggg < 8:341771/149‑1 (MQ=255) gCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAg < 2:327254/149‑1 (MQ=255) gCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAg < 6:343329/149‑1 (MQ=255) cATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAgg > 7:348837/1‑149 (MQ=255) aTCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAgg > 2:356958/1‑148 (MQ=255) aTGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGca > 3:83527/1‑146 (MQ=255) tCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAc > 1:143530/1‑149 (MQ=255) cTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTa < 4:338267/149‑1 (MQ=255) gCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt > 7:100660‑M2/1‑8 (MQ=255) gCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt > 1:335711‑M2/1‑8 (MQ=255) gCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGa < 4:83527/149‑1 (MQ=255) cAAGGCCggagttaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt > 7:186482‑M2/1‑7 (MQ=255) cAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt < 8:49635‑M2/148‑142 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 3:155300‑M2/1‑6 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 6:199672‑M2/1‑6 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttg > 3:57226‑M2/1‑6 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagagcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 8:228484‑M2/1‑6 (MQ=255) aGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgat < 1:224249‑M2/149‑145 (MQ=255) gggCggtgtgaggtgaccccggagcgcagcgcagggggcggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacataaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 7:137199‑M2/1‑4 (MQ=255) gCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatga > 7:77451‑M2/1‑3 (MQ=255) ccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatgac > 7:206676‑M2/1‑2 (MQ=255) ccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatgac > 6:154152‑M2/1‑2 (MQ=255) ccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgttt < 7:327267‑M2/82‑81 (MQ=255) ccggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgttt > 8:327267‑M2/1‑2 (MQ=255) | AACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAG > NC_002947/2258004‑2258299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |