New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2608453 | 49 (0.790) | 3 (0.050) | 3/254 | NT | 6.1% | coding (164/561 nt) | PP_2285 | hypothetical protein |
? | NC_002947 | = 2608480 | 46 (0.780) | coding (191/561 nt) | PP_2285 | hypothetical protein |
GCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAC > NC_002947/2608332‑2608628 | gCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCa < 6:118851/149‑1 (MQ=255) gCGGCTGGCACCACCGCGTCGGTGGTCGAGCAGAACCAGCAAGCGAAATCGACAGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGTCGTATCAGGACAACCAAGCGCAGACCGGTTATGCGAACGAGCAGGCCC‑GCCAgtc > 8:191535‑M2/1‑146 (MQ=255) gCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAgtc > 6:380584‑M2/1‑146 (MQ=255) cTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGcc > 3:191135/1‑149 (MQ=255) gCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCctct < 7:34103/149‑1 (MQ=255) gCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCctct < 4:63906/149‑1 (MQ=255) accaccGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCctct > 4:310713/1‑147 (MQ=255) ccGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTcagcag < 6:226390/149‑1 (MQ=255) cGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAACCGCAGCCCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCATCTCAGCAGGAATAc > 5:296583/1‑148 (MQ=255) gTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCa < 3:310713/149‑1 (MQ=255) tGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATAc > 2:298480/1‑146 (MQ=255) ggTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAg > 5:72074/1‑148 (MQ=255) gTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGaa > 4:365195/1‑149 (MQ=255) agcatAACCAGCAACCGAAATCGACCGCAGAATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATAGCAGaacaac < 6:296583/149‑1 (MQ=255) agAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt > 3:341881/1‑148 (MQ=255) gAACCAGCAAGCGTAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGATTACCAGAACAACCTCa < 3:50895/149‑1 (MQ=255) aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt < 2:73761/146‑1 (MQ=255) aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTc > 2:128462/1‑147 (MQ=255) aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGACTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt > 1:73761/1‑146 (MQ=255) aGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGcc < 3:258604/149‑1 (MQ=255) cGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCATGACAACCAAGCGCAGAACGGGTATGAGAAAGAGCAGGCCA‑GACAGTCTGCCTATCAGCAGGAATACCATAACAACATCAAGGCCCGAGCg > 5:17006/1‑149 (MQ=255) cGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAAAAACCTCAAGGCCCGAGCg > 5:22301/1‑149 (MQ=255) aaaTCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGc > 1:368918/1‑149 (MQ=255) cGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGTGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCa < 1:229825/149‑1 (MQ=255) atatGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACcgcgc > 8:64986/1‑149 (MQ=255) aaGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGcc < 4:191135/149‑1 (MQ=255) cagTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAg < 7:64986/149‑1 (MQ=255) cagTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAg > 2:277833/1‑149 (MQ=255) agTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGt < 2:368918/149‑1 (MQ=255) tGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGc < 2:361801/108‑1 (MQ=255) tGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGc > 1:361801/1‑108 (MQ=255) agaACGACTTGAAGGCGTATCGGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCg > 8:269690/1‑149 (MQ=255) agaACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGc < 1:298480/148‑1 (MQ=255) agaACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCg < 3:365195/149‑1 (MQ=255) agaACGACTTGAAGGCGTATCAGGACAACCAACCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATATCAGATCAACCTCAAGGCCCGAGCGGCTATGTCCATCGCGCGCGCCCAGGCGAGTGAAg < 7:242408/147‑1 (MQ=255) gACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCAGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCg > 1:306049/1‑149 (MQ=255) gAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTaga < 1:128462/147‑1 (MQ=255) gggACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCtgt < 7:269690/147‑1 (MQ=255) aGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCtgt < 6:72074/148‑1 (MQ=255) aaCCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc > 7:69169/1‑149 (MQ=255) aCCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgcg < 4:341881/149‑1 (MQ=255) ccAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgcgc > 8:293880/1‑149 (MQ=255) aaGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAgtctgcgcttggttgtcctgatacgccttcaactcgttctcagactgctgctcttcatatgctgcggtcgatttcgattgatggttctgctggaccacggccgcggtggtgc < 6:379202‑M2/149‑113 (MQ=255) gcgcAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAgtctgcgcttggttgtcctgatacgccttcaagtcgttctcagactgctgctcttcatatgctgcggtcgatttcgcttgctggttctgctggaccacggacgcg < 5:375239‑M2/140‑106 (MQ=255) gcgcAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAgtctgcgcttggttgtcctgatacgccttcaagtcgttctcagactgctgctcttcatatgctgcggtcgatttcgcttgctggttctgctggaccacggacgcg > 6:375239‑M2/1‑35 (MQ=255) gcAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc < 2:247587/141‑1 (MQ=255) gcAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc > 1:247587/1‑141 (MQ=255) ccGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGAc < 5:17935/149‑1 (MQ=255) tATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCtctc < 5:156355/149‑1 (MQ=255) aTGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTAt > 1:277124/1‑73 (MQ=255) aTGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTAt < 2:277124/73‑1 (MQ=255) aGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAACGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAgcgc < 1:277833/149‑1 (MQ=255) gCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACctct < 3:211235/137‑1 (MQ=255) gCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACctct > 4:211235/1‑137 (MQ=255) cAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGACCAACCTCAAGGCCCGAGCGGCTAGGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGa < 3:301916/149‑1 (MQ=255) gCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGCGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACa > 8:135039/1‑148 (MQ=255) aGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAc < 6:22301/149‑1 (MQ=255) aGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAc < 6:17006/149‑1 (MQ=255) | GCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCC‑GCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAC > NC_002947/2608332‑2608628 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |