New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 260845349 (0.790)3 (0.050) 3/254 NT 6.1% coding (164/561 nt) PP_2285 hypothetical protein
?NC_002947 = 2608480 46 (0.780)coding (191/561 nt) PP_2285 hypothetical protein

GCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAC  >  NC_002947/2608332‑2608628
                                                                                                                                                     |                                                                                                                                                    
gCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCa                                                                                                                                                      <  6:118851/149‑1 (MQ=255)
   gCGGCTGGCACCACCGCGTCGGTGGTCGAGCAGAACCAGCAAGCGAAATCGACAGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGTCGTATCAGGACAACCAAGCGCAGACCGGTTATGCGAACGAGCAGGCCCGCCAgtc                                                                                                                                                   >  8:191535‑M2/1‑146 (MQ=255)
   gCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAgtc                                                                                                                                                   >  6:380584‑M2/1‑146 (MQ=255)
       cTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGcc                                                                                                                                               >  3:191135/1‑149 (MQ=255)
          gCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCctct                                                                                                                                            <  7:34103/149‑1 (MQ=255)
          gCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCctct                                                                                                                                            <  4:63906/149‑1 (MQ=255)
            accaccGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCctct                                                                                                                                            >  4:310713/1‑147 (MQ=255)
                ccGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTcagcag                                                                                                                                      <  6:226390/149‑1 (MQ=255)
                       cGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAACCGCAGCCCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCATCTCAGCAGGAATAc                                                                                                                                >  5:296583/1‑148 (MQ=255)
                        gTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCa                                                                                                                              <  3:310713/149‑1 (MQ=255)
                         tGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATAc                                                                                                                                >  2:298480/1‑146 (MQ=255)
                          ggTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAg                                                                                                                             >  5:72074/1‑148 (MQ=255)
                           gTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGaa                                                                                                                           >  4:365195/1‑149 (MQ=255)
                               agcatAACCAGCAACCGAAATCGACCGCAGAATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATAGCAGaacaac                                                                                                                       <  6:296583/149‑1 (MQ=255)
                                  agAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt                                                                                                                     >  3:341881/1‑148 (MQ=255)
                                   gAACCAGCAAGCGTAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGATTACCAGAACAACCTCa                                                                                                                   <  3:50895/149‑1 (MQ=255)
                                    aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt                                                                                                                     <  2:73761/146‑1 (MQ=255)
                                    aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTc                                                                                                                    >  2:128462/1‑147 (MQ=255)
                                    aaCCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGACTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCt                                                                                                                     >  1:73761/1‑146 (MQ=255)
                                        aGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGcc                                                                                                              <  3:258604/149‑1 (MQ=255)
                                              cGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCATGACAACCAAGCGCAGAACGGGTATGAGAAAGAGCAGGCCAGACAGTCTGCCTATCAGCAGGAATACCATAACAACATCAAGGCCCGAGCg                                                                                                        >  5:17006/1‑149 (MQ=255)
                                              cGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAAAAACCTCAAGGCCCGAGCg                                                                                                        >  5:22301/1‑149 (MQ=255)
                                                aaaTCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGc                                                                                                      >  1:368918/1‑149 (MQ=255)
                                                        cGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGTGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCa                                                                                              <  1:229825/149‑1 (MQ=255)
                                                              atatGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACcgcgc                                                                                        >  8:64986/1‑149 (MQ=255)
                                                                   aaGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGcc                                                                                   <  4:191135/149‑1 (MQ=255)
                                                                           cagTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAg                                                                           <  7:64986/149‑1 (MQ=255)
                                                                           cagTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAg                                                                           >  2:277833/1‑149 (MQ=255)
                                                                            agTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGt                                                                          <  2:368918/149‑1 (MQ=255)
                                                                                tGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGc                                                                                                               <  2:361801/108‑1 (MQ=255)
                                                                                tGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGc                                                                                                               >  1:361801/1‑108 (MQ=255)
                                                                                  agaACGACTTGAAGGCGTATCGGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCg                                                                    >  8:269690/1‑149 (MQ=255)
                                                                                  agaACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGc                                                                     <  1:298480/148‑1 (MQ=255)
                                                                                  agaACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCg                                                                    <  3:365195/149‑1 (MQ=255)
                                                                                  agaACGACTTGAAGGCGTATCAGGACAACCAACCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATATCAGATCAACCTCAAGGCCCGAGCGGCTATGTCCATCGCGCGCGCCCAGGCGAGTGAAg                                                                      <  7:242408/147‑1 (MQ=255)
                                                                                       gACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCAGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCg                                                                >  1:306049/1‑149 (MQ=255)
                                                                                            gAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTaga                                                            <  1:128462/147‑1 (MQ=255)
                                                                                                       gggACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCtgt                                                <  7:269690/147‑1 (MQ=255)
                                                                                                       aGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCtgt                                                <  6:72074/148‑1 (MQ=255)
                                                                                                            aaCCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc                                          >  7:69169/1‑149 (MQ=255)
                                                                                                             aCCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgcg                                         <  4:341881/149‑1 (MQ=255)
                                                                                                              ccAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgcgc                                        >  8:293880/1‑149 (MQ=255)
                                                                                                                aaGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAgtctgcgcttggttgtcctgatacgccttcaactcgttctcagactgctgctcttcatatgctgcggtcgatttcgattgatggttctgctggaccacggccgcggtggtgc                                      <  6:379202‑M2/149‑113 (MQ=255)
                                                                                                                  gcgcAGACCGGGTATGCGAACGAGCAGGCCCGCCAgtctgcgcttggttgtcctgatacgccttcaagtcgttctcagactgctgctcttcatatgctgcggtcgatttcgcttgctggttctgctggaccacggacgcg                                             <  5:375239‑M2/140‑106 (MQ=255)
                                                                                                                  gcgcAGACCGGGTATGCGAACGAGCAGGCCCGCCAgtctgcgcttggttgtcctgatacgccttcaagtcgttctcagactgctgctcttcatatgctgcggtcgatttcgcttgctggttctgctggaccacggacgcg                                             >  6:375239‑M2/1‑35 (MQ=255)
                                                                                                                    gcAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc                                          <  2:247587/141‑1 (MQ=255)
                                                                                                                    gcAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATgc                                          >  1:247587/1‑141 (MQ=255)
                                                                                                                         ccGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGAc                             <  5:17935/149‑1 (MQ=255)
                                                                                                                              tATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCtctc                        <  5:156355/149‑1 (MQ=255)
                                                                                                                               aTGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTAt                                                                                                   >  1:277124/1‑73 (MQ=255)
                                                                                                                               aTGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTAt                                                                                                   <  2:277124/73‑1 (MQ=255)
                                                                                                                                        aGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAACGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAgcgc              <  1:277833/149‑1 (MQ=255)
                                                                                                                                         gCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACctct                         <  3:211235/137‑1 (MQ=255)
                                                                                                                                         gCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACctct                         >  4:211235/1‑137 (MQ=255)
                                                                                                                                          cAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGACCAACCTCAAGGCCCGAGCGGCTAGGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGa            <  3:301916/149‑1 (MQ=255)
                                                                                                                                             gCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGCGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACa          >  8:135039/1‑148 (MQ=255)
                                                                                                                                                     aGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAc  <  6:22301/149‑1 (MQ=255)
                                                                                                                                                     aGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAc  <  6:17006/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAGCGGCTGGCACCACCGCGTCCGTGGTCCAGCAGAACCAGCAAGCGAAATCGACCGCAGCATATGAAGAGCAGCAGTCTGAGAACGACTTGAAGGCGTATCAGGACAACCAAGCGCAGACCGGGTATGCGAACGAGCAGGCCCGCCAGTCTGCCTCTCAGCAGGAATACCAGAACAACCTCAAGGCCCGAGCGGCTATGTCCACCGCGCGCGCCCAGGCGAGTGAAGCGGGCGTAGAGGGCAACTCTGTGGATGCGCTCCTGGCCGACCTCTCGGCTCAGCGCGACAACTACAAC  >  NC_002947/2608332‑2608628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.